Tden023672.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000144.1:334681-336412[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.2e-06 8e-05 23.6 0.9 1 23 162 185 162 185 0.95 2 13 7.5e-06 0.00028 21.9 2.9 1 23 190 213 190 213 0.92 3 13 4e-07 1.5e-05 25.9 1.5 1 23 218 241 218 241 0.93 4 13 2.2e-06 8.1e-05 23.6 0.7 3 23 248 269 247 269 0.95 5 13 2.6e-06 9.6e-05 23.4 0.3 1 23 274 297 274 297 0.97 6 13 5.8e-08 2.1e-06 28.6 1.5 1 23 302 325 302 325 0.94 7 13 2.2e-06 8.1e-05 23.6 0.7 3 23 332 353 331 353 0.95 8 13 1.8e-06 6.8e-05 23.9 2.1 1 23 358 381 358 381 0.95 9 13 3.6e-06 0.00013 23.0 0.4 1 23 386 409 386 409 0.91 10 13 3e-06 0.00011 23.2 0.6 1 23 414 437 414 437 0.93 11 13 0.0018 0.065 14.5 2.7 1 23 442 465 442 465 0.95 12 13 3.4e-07 1.2e-05 26.2 1.2 1 23 470 493 470 493 0.95 13 13 0.03 1.1 10.6 5.1 1 23 498 521 498 521 0.95
Sequence Information
- Coding Sequence
- ATGGAATCGAGTGATATGCTTAATTGTTCTGTGagAGTGAAGGAGGAAACGATTGATGTCtcatttcataaaaatgatagtAAAATGACTGACGAGAAACCCGATATAAAAAACATCgaacttttacaattttcgCGGCAAAATTCAGCTCACATGCTTCGGGAATACGAGGAAAATCGCGAAACTGATATAAATGATGAAATGGAAATTGAGTTCGAGTGTGTAGACTTCATGTCCGCTATGGATCTATTGGCAAATAAGAAATCCAACGATTATTCTCGAAATTACCTGCAGCTTACGAAATATAGCAACGATTATCagatgcaaaataaaattaaaaaagaatctgTGGtggaagtgaaaaaagaagtgaatttgaattttgattatGAATTCAacgagagaaatgaaaaaaagaatgactTCGGAAATTTAAAAGATAAACTCAAAATACAGACCAAAAAGATACATAATCCTACCATCCATACCTGTGATGTATGTGGTAAGACATTTCCACGACTGCAAAGTCTCAAACGCCACAtcgattcagtgcataatggtatcacGCATGTATGTGATACATGCGGAAAGAAGTTCAAAACTAAGGGTCATCTCAAAACCCACATCGATGCGCTGCATAATGGCGTTAAACATGCGTGTGATCTTTGTgggaaaaaattctcaaataagagtaatctaaaaaaacacattgtttCGGTGcacaataaaatcattaatgcatgtaatatttgtgacaaatcattttctcaaaaagttcatctcaaaattcacatcgaTTCAGTGCACAATGGTGTTAGTTTTACATGTGATATATGTGGTAAGACATTTACACTAATAGGTACTCTCAAACGCCATATCAATTCGATACATGACAAAATCACtcatgaatgtgatatttgcggaaagaaattctcaaacaagagtaatctaaaaaaacacattgtttcggtgcataataaaatcattaatgcatgtaatatttgtgacaaatcattttctcaaaaagttcatctcaaaatccacatcgattcagtgcataatggtatcacGCATGTATGTGATACATGCGGAAAGAAGTTCAAAACTAAGGGTTATCTCAAAcgccacatcgattcggtacaTGACAAAGTCActcatgcatgtgatatttgcggaaagaagtACCCACAAAAGAGTGATCTCAAAAGACACATTGATGCGTTGCATAATGGCGTTaaacatgcatgtgatatttgtggcAAGTCatttactcaaaaaataaGTCTGAAAATGCACATCAATGCGCTGCATAATGGCGTTAAACATGCATGCGATCTTTGTGGAAAGACGTACAAAGCTAAATGTAGTCTGAAACTCCACATCGATACGCTGCACAATAAAATCATACATGAATGTGTTatgtgcggaaagaaattctcaCGTAAGAGTGATCTCAAGAGACACATCGACGTggtgcataataaaatcattcatgaatgtgatatttgcaaaaagaaatttttatataagtgtagcctcaaaaaacacattgatTCGGTACATAATAAAGTTGTGTAG
- Protein Sequence
- MESSDMLNCSVRVKEETIDVSFHKNDSKMTDEKPDIKNIELLQFSRQNSAHMLREYEENRETDINDEMEIEFECVDFMSAMDLLANKKSNDYSRNYLQLTKYSNDYQMQNKIKKESVVEVKKEVNLNFDYEFNERNEKKNDFGNLKDKLKIQTKKIHNPTIHTCDVCGKTFPRLQSLKRHIDSVHNGITHVCDTCGKKFKTKGHLKTHIDALHNGVKHACDLCGKKFSNKSNLKKHIVSVHNKIINACNICDKSFSQKVHLKIHIDSVHNGVSFTCDICGKTFTLIGTLKRHINSIHDKITHECDICGKKFSNKSNLKKHIVSVHNKIINACNICDKSFSQKVHLKIHIDSVHNGITHVCDTCGKKFKTKGYLKRHIDSVHDKVTHACDICGKKYPQKSDLKRHIDALHNGVKHACDICGKSFTQKISLKMHINALHNGVKHACDLCGKTYKAKCSLKLHIDTLHNKIIHECVMCGKKFSRKSDLKRHIDVVHNKIIHECDICKKKFLYKCSLKKHIDSVHNKVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482710;
- 90% Identity
- iTF_01482710;
- 80% Identity
- iTF_01482710;