Tden023672.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000144.1:334681-336412[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.032 6.3 7.7 1.2 15 44 160 186 154 186 0.89 2 13 2.4 4.7e+02 1.7 1.7 18 30 191 203 189 214 0.75 3 13 7.8e-05 0.015 16.0 2.5 18 44 219 242 208 242 0.91 4 13 0.23 45 5.0 0.9 18 43 247 269 243 270 0.73 5 13 0.0075 1.5 9.7 0.6 18 43 275 297 271 298 0.91 6 13 2.2e-05 0.0044 17.8 2.1 18 44 303 326 299 326 0.95 7 13 0.18 36 5.3 1.1 18 43 331 353 327 359 0.68 8 13 0.18 36 5.2 0.7 18 43 359 381 356 382 0.88 9 13 0.037 7.3 7.5 0.5 18 43 387 409 373 410 0.78 10 13 1.2 2.4e+02 2.6 2.0 5 29 403 426 399 442 0.68 11 13 0.89 1.8e+02 3.1 2.4 18 29 443 454 438 466 0.73 12 13 0.0027 0.52 11.1 1.6 18 43 471 493 459 494 0.85 13 13 1.4 2.8e+02 2.4 3.8 18 44 499 522 495 522 0.87
Sequence Information
- Coding Sequence
- ATGGAATCGAGTGATATGCTTAATTGTTCTGTGagAGTGAAGGAGGAAACGATTGATGTCtcatttcataaaaatgatagtAAAATGACTGACGAGAAACCCGATATAAAAAACATCgaacttttacaattttcgCGGCAAAATTCAGCTCACATGCTTCGGGAATACGAGGAAAATCGCGAAACTGATATAAATGATGAAATGGAAATTGAGTTCGAGTGTGTAGACTTCATGTCCGCTATGGATCTATTGGCAAATAAGAAATCCAACGATTATTCTCGAAATTACCTGCAGCTTACGAAATATAGCAACGATTATCagatgcaaaataaaattaaaaaagaatctgTGGtggaagtgaaaaaagaagtgaatttgaattttgattatGAATTCAacgagagaaatgaaaaaaagaatgactTCGGAAATTTAAAAGATAAACTCAAAATACAGACCAAAAAGATACATAATCCTACCATCCATACCTGTGATGTATGTGGTAAGACATTTCCACGACTGCAAAGTCTCAAACGCCACAtcgattcagtgcataatggtatcacGCATGTATGTGATACATGCGGAAAGAAGTTCAAAACTAAGGGTCATCTCAAAACCCACATCGATGCGCTGCATAATGGCGTTAAACATGCGTGTGATCTTTGTgggaaaaaattctcaaataagagtaatctaaaaaaacacattgtttCGGTGcacaataaaatcattaatgcatgtaatatttgtgacaaatcattttctcaaaaagttcatctcaaaattcacatcgaTTCAGTGCACAATGGTGTTAGTTTTACATGTGATATATGTGGTAAGACATTTACACTAATAGGTACTCTCAAACGCCATATCAATTCGATACATGACAAAATCACtcatgaatgtgatatttgcggaaagaaattctcaaacaagagtaatctaaaaaaacacattgtttcggtgcataataaaatcattaatgcatgtaatatttgtgacaaatcattttctcaaaaagttcatctcaaaatccacatcgattcagtgcataatggtatcacGCATGTATGTGATACATGCGGAAAGAAGTTCAAAACTAAGGGTTATCTCAAAcgccacatcgattcggtacaTGACAAAGTCActcatgcatgtgatatttgcggaaagaagtACCCACAAAAGAGTGATCTCAAAAGACACATTGATGCGTTGCATAATGGCGTTaaacatgcatgtgatatttgtggcAAGTCatttactcaaaaaataaGTCTGAAAATGCACATCAATGCGCTGCATAATGGCGTTAAACATGCATGCGATCTTTGTGGAAAGACGTACAAAGCTAAATGTAGTCTGAAACTCCACATCGATACGCTGCACAATAAAATCATACATGAATGTGTTatgtgcggaaagaaattctcaCGTAAGAGTGATCTCAAGAGACACATCGACGTggtgcataataaaatcattcatgaatgtgatatttgcaaaaagaaatttttatataagtgtagcctcaaaaaacacattgatTCGGTACATAATAAAGTTGTGTAG
- Protein Sequence
- MESSDMLNCSVRVKEETIDVSFHKNDSKMTDEKPDIKNIELLQFSRQNSAHMLREYEENRETDINDEMEIEFECVDFMSAMDLLANKKSNDYSRNYLQLTKYSNDYQMQNKIKKESVVEVKKEVNLNFDYEFNERNEKKNDFGNLKDKLKIQTKKIHNPTIHTCDVCGKTFPRLQSLKRHIDSVHNGITHVCDTCGKKFKTKGHLKTHIDALHNGVKHACDLCGKKFSNKSNLKKHIVSVHNKIINACNICDKSFSQKVHLKIHIDSVHNGVSFTCDICGKTFTLIGTLKRHINSIHDKITHECDICGKKFSNKSNLKKHIVSVHNKIINACNICDKSFSQKVHLKIHIDSVHNGITHVCDTCGKKFKTKGYLKRHIDSVHDKVTHACDICGKKYPQKSDLKRHIDALHNGVKHACDICGKSFTQKISLKMHINALHNGVKHACDLCGKTYKAKCSLKLHIDTLHNKIIHECVMCGKKFSRKSDLKRHIDVVHNKIIHECDICKKKFLYKCSLKKHIDSVHNKVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482815;
- 90% Identity
- iTF_01482815;
- 80% Identity
- iTF_01482815;