Tden022577.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000131.1:337233-339068[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.4e-05 0.0013 19.9 0.3 3 23 174 195 172 195 0.94 2 14 1.3e-05 0.00049 21.2 0.9 1 23 200 223 200 223 0.94 3 14 2.3e-05 0.00085 20.4 4.1 1 23 228 251 228 251 0.96 4 14 3.1e-05 0.0011 20.0 0.6 2 23 257 279 257 279 0.95 5 14 1.5e-05 0.00056 21.0 1.5 1 23 284 307 284 307 0.93 6 14 6.4e-07 2.4e-05 25.3 2.7 1 23 312 335 312 335 0.95 7 14 1.5e-05 0.00056 21.0 1.5 1 23 340 363 340 363 0.93 8 14 8.5e-05 0.0031 18.6 5.2 1 23 368 391 368 391 0.96 9 14 3.1e-06 0.00012 23.1 1.0 2 23 397 419 397 419 0.95 10 14 1.5e-05 0.00056 21.0 1.5 1 23 424 447 424 447 0.93 11 14 7.4e-06 0.00027 22.0 5.2 1 23 452 475 452 475 0.95 12 14 1.4e-06 5.2e-05 24.2 0.2 1 23 480 503 480 503 0.95 13 14 8.1e-07 3e-05 25.0 2.3 1 23 508 531 508 532 0.92 14 14 6e-08 2.2e-06 28.6 1.1 1 23 536 559 536 559 0.95
Sequence Information
- Coding Sequence
- ATGGAACCAAGTGAAAAGTTCAACTGTGGTGtcagaataaaaaaagaacccGTTGATGTGTCCTTTACTGATAATGAGTACGATATCATTGACACGAAACGTGACATTGAAGATTTTcaattcttcaaattttcacagaaAAATCCAGTACATATGCTTCAAAAAGCTGACGAAAATCACGAAGGTGATCTTGACGAGTTGGCAATCGAGTTTGAATGTCAAGAGGTGAAGCTCAACATGGATTTATTAGCagttacaaaaattgaagattgCTCACAAAATCACTTGCAGGGAATGGAAGATGGAGATGGCTATCAAactcgaaataaaattaaagtagaaACTTTGGgagcagtaaaaaaagaatcatttgTGGACGACGACGCAAAACAATTGAATATGGATTTCGACCGTGGTGTCAGCGAGCCAAGAGAGGAAAGCAGTGTCACAAAAGAGTTTACCGATAACCATAGATTCGATACGCAAACCATAACAACGCGTAGTGGTACTGACATTGCATGCGAGATGTGTAGAAAGAAATTCTCTAACAAATGgaatctcaaaatccacatcgattcgatACATAATGGTATCACCCACGCGTGTGATACGTGTGAAAAGTCATTTGCTGGTAAAAGcaatctcaaaaaacacatcgattcggtgcatgCTGGTATCAAACATTCATGCCGTacatgcggaaagaaattttcacaaagGAGTTATCTAAAAAACCACACCATTACAGTGCACAAGGGTGTCCCAAATGTTTGTCATACATGCGGAAAGTCATTTGCTGCTAAAAACAATCTCAAAGttcacatcgattcggtacaTAATGGTATCACTCACGCATGTGATATATGTAGAAAGAAATTCACTGAGAAGAGCAATCTTACAAAACACATCGTTTCGGTGCATGCTGGTATCAAACATTCATGCCATACATGCGGAAAGTCATTTGCTTCTAAAAGCAACCTCAAAGttcacatcgattcggtacataatggtatcactcacgcatgtgatatatgcagAAAGAAATTCACTGAGAAGAGCAATCTTACAAAACACATCGTTTCGGTGCATGCTGGTATCAAACATTCATGCCATacatgcggaaagaaattttcacaaaagatTTATCTAAAAAGCCACACCATTACAGTGCACAAGGGTGTCCCAAATGTTTGTCATACATGCGGAAAGTCATTTACTGCTAAAAGCAACCTCAAAGttcacatcgattcggtacaTAATGGTATCACTCACGCATGTGATATATGTAGAAAGAAATTCACTGAGAAGAGCAATCTTACAAAACACATCGTTTCGGTGCATGCTGGTATCAACCATTCATGCCATacatgcggaaagaaattttcacaaaagggTCATTTAAACAACCATATCAATGCGGTACATAATGGTATCACTTACGCTTGTGATACGTGTGGAAAGTCATTTACTGCTAAAAGCAACCTCAAAGttcacatcgattcggtacaTAATGGTATCACTCACGCGTGTAATACGTGTGGAAAGTCATTTGCTGATAAAAGCAATcttaaaaaacacatcgatttGGTGCATCATAAAGTCACTCATAAATGTGACATATGtggaaagtcattttcacaaaaGAAAAACCTTAAAGCCCACATCGTTATGGCGCATCGCTAA
- Protein Sequence
- MEPSEKFNCGVRIKKEPVDVSFTDNEYDIIDTKRDIEDFQFFKFSQKNPVHMLQKADENHEGDLDELAIEFECQEVKLNMDLLAVTKIEDCSQNHLQGMEDGDGYQTRNKIKVETLGAVKKESFVDDDAKQLNMDFDRGVSEPREESSVTKEFTDNHRFDTQTITTRSGTDIACEMCRKKFSNKWNLKIHIDSIHNGITHACDTCEKSFAGKSNLKKHIDSVHAGIKHSCRTCGKKFSQRSYLKNHTITVHKGVPNVCHTCGKSFAAKNNLKVHIDSVHNGITHACDICRKKFTEKSNLTKHIVSVHAGIKHSCHTCGKSFASKSNLKVHIDSVHNGITHACDICRKKFTEKSNLTKHIVSVHAGIKHSCHTCGKKFSQKIYLKSHTITVHKGVPNVCHTCGKSFTAKSNLKVHIDSVHNGITHACDICRKKFTEKSNLTKHIVSVHAGINHSCHTCGKKFSQKGHLNNHINAVHNGITYACDTCGKSFTAKSNLKVHIDSVHNGITHACNTCGKSFADKSNLKKHIDLVHHKVTHKCDICGKSFSQKKNLKAHIVMAHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482660;
- 90% Identity
- iTF_01482660;
- 80% Identity
- iTF_01482660;