Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000048.1:472288-474156[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00028 0.01 17.0 0.1 5 23 156 175 155 175 0.92

2 15 2.8e-06 0.0001 23.3 0.4 1 23 180 203 180 203 0.96

3 15 3.5e-06 0.00013 23.0 0.6 1 23 208 231 208 231 0.94

4 15 1.6e-07 5.8e-06 27.2 0.4 1 23 236 259 236 259 0.95

5 15 2e-06 7.4e-05 23.7 0.6 1 23 264 287 264 287 0.95

6 15 0.00019 0.0069 17.6 4.0 1 23 292 315 292 315 0.93

7 15 3.1e-06 0.00011 23.2 1.7 1 23 320 343 320 343 0.96

8 15 1.4e-06 5.2e-05 24.2 0.4 1 23 348 371 348 371 0.96

9 15 3.6e-05 0.0013 19.8 0.8 1 23 376 399 376 399 0.94

10 15 4.5e-06 0.00016 22.7 2.8 1 23 404 427 404 427 0.93

11 15 2.2e-06 8e-05 23.6 1.6 1 23 432 455 432 455 0.96

12 15 0.15 5.6 8.4 0.1 8 23 467 483 460 483 0.88

13 15 1.9e-05 0.0007 20.7 3.6 1 23 488 511 488 511 0.95

14 15 1.8e-05 0.00067 20.7 0.5 1 23 516 539 516 539 0.95

15 15 0.014 0.5 11.7 0.3 1 23 544 567 544 568 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00028	0.01	17.0	0.1	5	23	156	175	155	175	0.92
2	15	2.8e-06	0.0001	23.3	0.4	1	23	180	203	180	203	0.96
3	15	3.5e-06	0.00013	23.0	0.6	1	23	208	231	208	231	0.94
4	15	1.6e-07	5.8e-06	27.2	0.4	1	23	236	259	236	259	0.95
5	15	2e-06	7.4e-05	23.7	0.6	1	23	264	287	264	287	0.95
6	15	0.00019	0.0069	17.6	4.0	1	23	292	315	292	315	0.93
7	15	3.1e-06	0.00011	23.2	1.7	1	23	320	343	320	343	0.96
8	15	1.4e-06	5.2e-05	24.2	0.4	1	23	348	371	348	371	0.96
9	15	3.6e-05	0.0013	19.8	0.8	1	23	376	399	376	399	0.94
10	15	4.5e-06	0.00016	22.7	2.8	1	23	404	427	404	427	0.93
11	15	2.2e-06	8e-05	23.6	1.6	1	23	432	455	432	455	0.96
12	15	0.15	5.6	8.4	0.1	8	23	467	483	460	483	0.88
13	15	1.9e-05	0.0007	20.7	3.6	1	23	488	511	488	511	0.95
14	15	1.8e-05	0.00067	20.7	0.5	1	23	516	539	516	539	0.95
15	15	0.014	0.5	11.7	0.3	1	23	544	567	544	568	0.95

Sequence Information

Coding Sequence: ATGAATTCGAGTGGTGTATTTAACTGTGTCTTtagagTCAAAAGAGAGCCCTGTGATGAGCTGCTTACCGAAACTGATTATAAAGCAATTAATAAGATCCTCGATACTGAAAAAATCCAATGCTCGAGATTTCTACAAGAAAAACCAATCAAAATGCTTCAAGAATATGACGAAGATCATGAACGCGAGTTCAATGATGATATTGAGATAGTTGTAGAATGCAAAGACGTAAAGCCCAGTATGGATTTATTAgtagttaaaaaaatggaCGATTATCCTCCAAATCACTTGCCGGATGTGAAATGTAGGTCTGATTATAAAACTCATGATAGAATTAAAATAGAACCTCCGGATGAAGTGAAACAGGAATTTTTCGGCGATGAAGCAACGCAATTGAGATTTGATCGTGGACTTGacggaaaaaatgaaaaaatgacggAAAagtttaataacaaaaatttggaTGTATGTGaaaagacattttcacaaaaaagtaatcttaAAATCCACGTAGATTCAGTACACAATCGTATCACATATCAATGTGATACATGCGGAAAGGAGTACTCAAAGAAAGGTGATCTCAAgaaacacatcgattcggcCCATAATGGTATTAGGCATGCATGTGGTATATGTGGCAAGACATTTTCACAGAAGAGTGATATCAAgaaacacatcgattcggcCCATAATGGTATTAGGCATCCATGTGGTATATGTGGCAAGACATTTTCACAGAAGGGTAATCTCAACAAACACATTGATTCGGCCCATAATGGTATTAGGCATCCATGTGGTATATGTGGCAAGACATTTTCACAGAAGAGTGATATCAAgaaacacatcgattcggcCCATAATGGTATAACACATGCATGTAGTATATGCGGCAAGACATTTCCACAGAAGTGTCATATCAAGAAACACATCAATGcggtgcataataaaatcactcatCCATGTGATATATGCGAAAAGAAGTTCTCAAATGAAAGTAATCTTTACAAACATATAAATTCAACGCACAATGGTATCAGATATGCATGTAGTATTTGCGaaaagacattttcacaaaaaagttATCTCACCATCCACATAGATAAGGTGCACAATAAAGTcacacatgcatgtgatatatgtgagaagaaattttcagaaaaaggtAGTcttaaaaaacacatcgattcggcCCATAATGGTATTATGCATGCATGTAGTATATGCGGGAAGAAATGCTCACAGAAAGATAATCTCAAGAAACACATCAATGCtgtgcataataaaatcactcatCCATGTGATATATGCGAAAAGAAGTTCTCAAATGAAAGTAATCTTTACAGACATATAAATTCAACGCACAATGGTATCAGATATGCATGTagtattttcgaaaaaaaattttcacaaaaaagtaCTCTCACCATCCACATAGATGAGGTGCACAATAATGTcacacatgcatgtgatatatgtgAAAAGAAGTTCTCAAATAAAAGTAATCTTTacaaacataaaaattcaacGCACAATGGTATCAGATATGCATGTAGtatttgcgaaaagaaatcCTCGACGAAGAGtgatctcaaaaaacacatcgattctGTGCACAATAAAATTACTTACACATGCGACCCATGCGGAAACAGATACCCACGAAAGATGCTTCTTAAAGCTCACATTAATGCGGTGCATCATTCACGCATAACAACTTAG
Protein Sequence: MNSSGVFNCVFRVKREPCDELLTETDYKAINKILDTEKIQCSRFLQEKPIKMLQEYDEDHEREFNDDIEIVVECKDVKPSMDLLVVKKMDDYPPNHLPDVKCRSDYKTHDRIKIEPPDEVKQEFFGDEATQLRFDRGLDGKNEKMTEKFNNKNLDVCEKTFSQKSNLKIHVDSVHNRITYQCDTCGKEYSKKGDLKKHIDSAHNGIRHACGICGKTFSQKSDIKKHIDSAHNGIRHPCGICGKTFSQKGNLNKHIDSAHNGIRHPCGICGKTFSQKSDIKKHIDSAHNGITHACSICGKTFPQKCHIKKHINAVHNKITHPCDICEKKFSNESNLYKHINSTHNGIRYACSICEKTFSQKSYLTIHIDKVHNKVTHACDICEKKFSEKGSLKKHIDSAHNGIMHACSICGKKCSQKDNLKKHINAVHNKITHPCDICEKKFSNESNLYRHINSTHNGIRYACSIFEKKFSQKSTLTIHIDEVHNNVTHACDICEKKFSNKSNLYKHKNSTHNGIRYACSICEKKSSTKSDLKKHIDSVHNKITYTCDPCGNRYPRKMLLKAHINAVHHSRITT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01482681;
90% Identity: iTF_01482681;
80% Identity: iTF_01482681;