Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000085.1:8199-10172[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.83 30 6.1 1.8 7 23 169 186 169 186 0.92

2 16 0.0014 0.05 14.9 0.4 1 23 186 209 186 209 0.94

3 16 4.5e-07 1.6e-05 25.8 1.2 1 23 214 237 214 237 0.95

4 16 7.6e-07 2.8e-05 25.1 1.6 1 23 245 268 245 268 0.95

5 16 5.4e-06 0.0002 22.4 0.8 1 23 273 296 273 296 0.96

6 16 1.6e-06 5.7e-05 24.1 0.7 1 23 301 324 301 324 0.93

7 16 1.4e-06 5.2e-05 24.2 2.2 1 23 329 352 329 352 0.93

8 16 2.8e-06 0.0001 23.3 3.0 1 23 357 380 357 380 0.94

9 16 6.6e-06 0.00024 22.1 1.7 1 23 385 408 385 408 0.94

10 16 0.0021 0.079 14.2 1.5 1 23 413 436 413 436 0.94

11 16 2e-06 7.4e-05 23.8 1.7 1 23 441 464 441 464 0.94

12 16 0.00035 0.013 16.7 3.0 1 23 469 492 469 492 0.95

13 16 9.1e-07 3.3e-05 24.8 1.1 1 23 497 520 497 520 0.97

14 16 7.4e-06 0.00027 22.0 0.3 1 23 525 548 525 548 0.93

15 16 0.0003 0.011 16.9 2.4 1 23 553 576 553 576 0.96

16 16 3.3e-06 0.00012 23.1 0.9 1 23 581 604 581 604 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.83	30	6.1	1.8	7	23	169	186	169	186	0.92
2	16	0.0014	0.05	14.9	0.4	1	23	186	209	186	209	0.94
3	16	4.5e-07	1.6e-05	25.8	1.2	1	23	214	237	214	237	0.95
4	16	7.6e-07	2.8e-05	25.1	1.6	1	23	245	268	245	268	0.95
5	16	5.4e-06	0.0002	22.4	0.8	1	23	273	296	273	296	0.96
6	16	1.6e-06	5.7e-05	24.1	0.7	1	23	301	324	301	324	0.93
7	16	1.4e-06	5.2e-05	24.2	2.2	1	23	329	352	329	352	0.93
8	16	2.8e-06	0.0001	23.3	3.0	1	23	357	380	357	380	0.94
9	16	6.6e-06	0.00024	22.1	1.7	1	23	385	408	385	408	0.94
10	16	0.0021	0.079	14.2	1.5	1	23	413	436	413	436	0.94
11	16	2e-06	7.4e-05	23.8	1.7	1	23	441	464	441	464	0.94
12	16	0.00035	0.013	16.7	3.0	1	23	469	492	469	492	0.95
13	16	9.1e-07	3.3e-05	24.8	1.1	1	23	497	520	497	520	0.97
14	16	7.4e-06	0.00027	22.0	0.3	1	23	525	548	525	548	0.93
15	16	0.0003	0.011	16.9	2.4	1	23	553	576	553	576	0.96
16	16	3.3e-06	0.00012	23.1	0.9	1	23	581	604	581	604	0.95

Sequence Information

Coding Sequence: ATGAGATTTCCAACCAGTAAGATGGAATCTGGTGATTTATTCAATCCTGCTGtgagAGTGAAAGAAGAACCTCGTGATGAGCCGCTCAATGCTAatgattatgaaataattgacTTGACACTTGCagtaaatcaaaatattaaatacgaAAAGTTTTGGCaagaaaattcaacccaAGAGCTTTTTCAAGAATATGACGAAAATCAGGAAAATGAACTTGACGACATCCAAATCGAATTGGAATGTACAGACATGAAGCCCAATTTATTGGCGGTTGCGAAAATTGAAGATTTCTCTCCAAATCAATGGCCGGATAGCGATGTTCATAAAAACGGAAGTAATATTAAACTAGAAACTGTCGGAACAGTGAAGGAAGAAATTTTCAGTGAAGAAGCCACTGTGATGAATGTTGAACgcgtttcaaaaaatatgaactgTAAACATAGGCTCGAAACTCAAATTGACACTGCGCATAATGGAATCAGACGTGCATGTGACACTTCTGGAAAATCATTCAGGCGACAGACTCATATGAAAGTCCACAAGGATGTCACTCACGCATGTGAAATATGCGGCAATGTATACAAACGaagaaattttctcaaaattcacatcgaCTCGGCGCATAATAGTGTCAGACATGTCTGCGACAtttgtggaaagacattcacacaaaaaatGAGTCTCAAACgtcacatcgattcggtgcattATAAAGTGGCAAATATTACACATCCATGTaatatatgccaaaagacGTTTTCAGTCAAGAGTAATCTCAGAAGACACATCGATTCGTTGCATAAAGGTATCAATTATACGTGTGATTCATGTGGTAACACGTTTACAACAAAGTATAATCTGCAAAACCATATCGACTCGGTGCATAATAGTGTCAGACATGTCTGCGACATTTGTGGAAAAacattcacacaaaaaatGGGTCTCAAACGTCACATCGATTTAGAGCATAATGGTGTTAGACATGTATGTaatatatgccaaaagacattctcagACAAGAGTTAcctaaaaaaacacatcgatttAATGCATAATGGTGTTAGACATGCATGTaatatatgccaaaagacattctcagACAAGAGTTAcctaaaaaaacacatcgattcgaAGCATAATGGTGTCGGTCATGCATGTaatatatgccaaaagacattctcagACAAGAGGAGTCTAAAAAATCACATCGATTCTGTGCATAACAGTGTCagacatgcatgtgatatttgccaaaagacattcttAGGCAAGAGTTAcctaaaaaaacacatcgattcgatGCATAATGGTGTCGGTCATGCATGTaatatatgccaaaagacattcgcagacaagagtaatctcaaaactcacatcgatTCAAGGCATAATGGTGTTAGACATGCATGTaatatatgccaaaagacattctcagACAAGAGAAGTATAAAACAACACACCAATTCGATGCATAAAGCAGTCAAGTATACGTGTGATTCATGTGGTAAGACGTTTACACGAAAGACTTCTCTCCAATACCATATCAACGTAGTGCACAATGGATTCGGCTATGTATGTGATAAGTGCGGAACGAAATACACAACGAAAGGTAATCTTAAAACCCACATCGATGCGATACATAATGGTATCAATTATGCATgtgatttttgtgaaaaaaaatataaatatcaaactCAACTCAATAAGCATGTCAAATCGTCGCATAGTGGTATCATCCATTCATGCGAGACATGCGGCAAGACATTCGGACAGAAAAGAAATCTCAGAGCTCACATCGATATGGCGCATCGCACTCTCATTATGAcctaa
Protein Sequence: MRFPTSKMESGDLFNPAVRVKEEPRDEPLNANDYEIIDLTLAVNQNIKYEKFWQENSTQELFQEYDENQENELDDIQIELECTDMKPNLLAVAKIEDFSPNQWPDSDVHKNGSNIKLETVGTVKEEIFSEEATVMNVERVSKNMNCKHRLETQIDTAHNGIRRACDTSGKSFRRQTHMKVHKDVTHACEICGNVYKRRNFLKIHIDSAHNSVRHVCDICGKTFTQKMSLKRHIDSVHYKVANITHPCNICQKTFSVKSNLRRHIDSLHKGINYTCDSCGNTFTTKYNLQNHIDSVHNSVRHVCDICGKTFTQKMGLKRHIDLEHNGVRHVCNICQKTFSDKSYLKKHIDLMHNGVRHACNICQKTFSDKSYLKKHIDSKHNGVGHACNICQKTFSDKRSLKNHIDSVHNSVRHACDICQKTFLGKSYLKKHIDSMHNGVGHACNICQKTFADKSNLKTHIDSRHNGVRHACNICQKTFSDKRSIKQHTNSMHKAVKYTCDSCGKTFTRKTSLQYHINVVHNGFGYVCDKCGTKYTTKGNLKTHIDAIHNGINYACDFCEKKYKYQTQLNKHVKSSHSGIIHSCETCGKTFGQKRNLRAHIDMAHRTLIMT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01482665;
90% Identity: iTF_01482665;
80% Identity: iTF_01482665;