Tden003545.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000006.1:2502290-2504167[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.2e-06 0.00015 22.8 5.1 1 23 158 181 158 181 0.95 2 15 2.4e-06 8.7e-05 23.5 1.6 1 23 186 209 186 209 0.96 3 15 2.1e-07 7.7e-06 26.8 2.6 1 23 214 237 214 237 0.95 4 15 5.5e-07 2e-05 25.5 2.7 1 23 242 265 242 265 0.96 5 15 5.9e-05 0.0022 19.1 2.3 1 23 270 293 270 293 0.96 6 15 0.00074 0.027 15.7 3.4 2 23 299 321 298 321 0.96 7 15 4e-07 1.5e-05 26.0 2.2 1 23 326 349 326 349 0.97 8 15 7.3e-06 0.00027 22.0 0.8 2 23 355 377 354 377 0.93 9 15 1.4e-05 0.00051 21.1 1.0 1 23 382 405 382 405 0.95 10 15 3.8e-06 0.00014 22.9 0.6 1 23 410 433 410 433 0.94 11 15 1.8e-05 0.00067 20.7 2.8 2 23 439 461 438 462 0.94 12 15 7.7e-06 0.00028 21.9 1.1 1 23 466 489 466 489 0.94 13 15 2.5e-06 9.1e-05 23.5 2.5 1 23 494 517 494 517 0.91 14 15 0.00031 0.012 16.8 0.6 1 20 522 541 522 543 0.92 15 15 8.4e-06 0.00031 21.8 0.2 1 23 550 573 550 573 0.94
Sequence Information
- Coding Sequence
- ATGGATCCTAGTAGTACATTTGACTCTGCTATCagaataaaaaaggaaCCCGTTGATACATCGCTCATTGAATATGATAACAATGTGATTGACAAGCATCCTGatgttgataattttcaattctcaAGGCTTCTGCAAGGATATTCGACGCTTCAAGAATGTAAACAAAATCATGATAATGGACTTGACGAGATCAAAGTTGAAATCGAATGTAGGGACGTGAAGCCCGAATTTAACTTATTAGCAGTTACGAAAATTGAGGATTGTACTCAACATCGATTGCAGCATATGAAATATAACGACGAATACACAAGTCAAAACATCATAAAAACAGAAACTGTGAGTAAAATAAAGGAAGAAATTAATTCGAATTTCGATCTTGAACTTGACGAGAGAAACGAAAAGAGCAAAAAGCTCAACAATATCGATAGAGTCAAAACCCACATTGGTACGTTGAATAGCGGGGCAGTCCATGTATGCAAAACATGCGGAAAGACGTTTAAACAAAAGAGTCATCTGAATAATCATGTTGAATCAACGCATGATGGTGTCACTCactcatgtgatatttgcgaaAAGACGTTTTCCAAAAAAggtaatctcaaaactcacatcgatactgtgcacaatggtgtcacacatACGTGCAATACGTGTGGAAAGTCATTTACTCAAAAAAGTAGTCTCAAAACTCATATGGATAttgtgcacaatggtgtcacacatACGTGCAATACGTGTGGAAAATCATTCACTCAAAAAAGttatctcaaaactcacatcggTACTGCGCACGATGGTGTCACACATACGTGCAATACgtgtggaaagacattcaaACGAAAAGATATTCTCAAAACCCACATCGGTActgtgcacaatggtgtcaggCAAACATGTATGACATGTGGAATGACGTTTCAACGCAAGAGTCATCTGGATAGGCATGTTAAATCAACGCATGATGGTgtcacacatacatgcaatacgtgtggaaagacattcactcaaaATAGTAgcctcaaaatccacatcgatacGTTACATAATGGGGTCAAATGTGCATGTGACatatgcggaaaaaaatttacgagtaAGGgttatctcaaaatccacatcgattcggtgcacaaCGGTGTTAAACATTCATGTGATATCTGCGGAAAGTTatttactcaaaaaattaatctccAAACTCACATCGATTCGATGCACAACGGTGTCACTCATGCATGTGACatatgcggaaaaaaatttacgagtaAGGgttatctcaaaatccacatcgattcggtgcacaatggtgtcgCCACTACTTGTGATATATGCAGAAAGAAATTCTCAACGAAAGGCAATCTCAAACAACATATAGATTCGATGCATCATAAAGTCActcatgcatgtgatatttgcggaaagtcattttctaaaaaaattagtctcaaaactcacatcgatTCGATGCACAACGGTGTCACTCATGCATGTGACATGTGCGGAAAGACATTCAACCGAAAATATAATCTCAAACATCACATTGATGCGGTGCATAATGGAATCATCCACGCATGCGATAGGTGTGATATGACTTTTAAACGTAAGGACAAGCTGAAgatccacatcgattcggttgATCGTTGTTCAACTCACGCTTGTGGAGTATGCGGAAAAAATttcggacgaaaaaaaaatctcattgcCCACATGGATATGGCTCATCGCTCATGTGCAACGACCCAATAA
- Protein Sequence
- MDPSSTFDSAIRIKKEPVDTSLIEYDNNVIDKHPDVDNFQFSRLLQGYSTLQECKQNHDNGLDEIKVEIECRDVKPEFNLLAVTKIEDCTQHRLQHMKYNDEYTSQNIIKTETVSKIKEEINSNFDLELDERNEKSKKLNNIDRVKTHIGTLNSGAVHVCKTCGKTFKQKSHLNNHVESTHDGVTHSCDICEKTFSKKGNLKTHIDTVHNGVTHTCNTCGKSFTQKSSLKTHMDIVHNGVTHTCNTCGKSFTQKSYLKTHIGTAHDGVTHTCNTCGKTFKRKDILKTHIGTVHNGVRQTCMTCGMTFQRKSHLDRHVKSTHDGVTHTCNTCGKTFTQNSSLKIHIDTLHNGVKCACDICGKKFTSKGYLKIHIDSVHNGVKHSCDICGKLFTQKINLQTHIDSMHNGVTHACDICGKKFTSKGYLKIHIDSVHNGVATTCDICRKKFSTKGNLKQHIDSMHHKVTHACDICGKSFSKKISLKTHIDSMHNGVTHACDMCGKTFNRKYNLKHHIDAVHNGIIHACDRCDMTFKRKDKLKIHIDSVDRCSTHACGVCGKNFGRKKNLIAHMDMAHRSCATTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482693;
- 90% Identity
- iTF_01482706;
- 80% Identity
- iTF_01482706;