Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000004.1:1445124-1447155[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.6e-05 0.00094 20.3 0.7 2 23 169 191 168 192 0.94

2 16 1.6e-05 0.00058 20.9 0.5 1 23 196 219 196 219 0.91

3 16 6.1e-07 2.3e-05 25.4 1.3 1 23 224 247 224 247 0.97

4 16 9.1e-06 0.00033 21.7 0.7 1 23 253 276 253 276 0.95

5 16 2.1e-06 7.7e-05 23.7 0.2 1 23 281 304 281 304 0.97

6 16 2.9e-06 0.00011 23.2 0.6 2 23 311 333 311 333 0.96

7 16 7.1e-07 2.6e-05 25.2 0.5 1 23 338 361 338 361 0.96

8 16 2e-05 0.00072 20.6 3.0 1 23 366 389 366 389 0.93

9 16 1.5e-06 5.6e-05 24.1 0.4 2 23 395 417 395 417 0.92

10 16 2.6e-06 9.7e-05 23.4 3.3 1 23 422 445 422 445 0.97

11 16 2.4e-06 8.8e-05 23.5 0.6 1 23 451 474 451 474 0.95

12 16 1.8e-06 6.5e-05 23.9 0.7 1 23 479 502 479 502 0.96

13 16 0.0019 0.069 14.4 1.1 1 18 507 524 507 525 0.93

14 16 6.3e-06 0.00023 22.2 0.4 2 23 535 557 535 557 0.92

15 16 8.2e-07 3e-05 25.0 2.9 1 23 562 585 562 585 0.97

16 16 1.2e-05 0.00046 21.3 1.1 1 23 591 614 591 614 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.6e-05	0.00094	20.3	0.7	2	23	169	191	168	192	0.94
2	16	1.6e-05	0.00058	20.9	0.5	1	23	196	219	196	219	0.91
3	16	6.1e-07	2.3e-05	25.4	1.3	1	23	224	247	224	247	0.97
4	16	9.1e-06	0.00033	21.7	0.7	1	23	253	276	253	276	0.95
5	16	2.1e-06	7.7e-05	23.7	0.2	1	23	281	304	281	304	0.97
6	16	2.9e-06	0.00011	23.2	0.6	2	23	311	333	311	333	0.96
7	16	7.1e-07	2.6e-05	25.2	0.5	1	23	338	361	338	361	0.96
8	16	2e-05	0.00072	20.6	3.0	1	23	366	389	366	389	0.93
9	16	1.5e-06	5.6e-05	24.1	0.4	2	23	395	417	395	417	0.92
10	16	2.6e-06	9.7e-05	23.4	3.3	1	23	422	445	422	445	0.97
11	16	2.4e-06	8.8e-05	23.5	0.6	1	23	451	474	451	474	0.95
12	16	1.8e-06	6.5e-05	23.9	0.7	1	23	479	502	479	502	0.96
13	16	0.0019	0.069	14.4	1.1	1	18	507	524	507	525	0.93
14	16	6.3e-06	0.00023	22.2	0.4	2	23	535	557	535	557	0.92
15	16	8.2e-07	3e-05	25.0	2.9	1	23	562	585	562	585	0.97
16	16	1.2e-05	0.00046	21.3	1.1	1	23	591	614	591	614	0.95

Sequence Information

Coding Sequence: ATGGAATCGAGTGAAATGTTTAACTGTGATAtaagAGTGAAAGAAGAGCCAATCGATGTGTTGCTCGGTGAAAATGATTATATTGTAATTGACAAGACACCAGAtgtcaacaattttcaattactcaGGCATCCGCAAGAAAATCGAATTCAAAAATCTGACGATAATCACGAAAGTGAACTTGACGACTTGGCGATTGAGTTAGAATGTAAAGAAATGAAGCCGAACGTGGATTTATTAGCAGttacgaaaattgaaaattggtcTGAAGATCACTTGGTGGCTATTGAAAATAGTAATGAATATAAAACtcaaaacataattaaattaGAAGCTTTAGatgcagtaaaaaaagaatcactAGTGAACGACGTAAATCAATTGAATATCAATTCCAACTGCAAAATCAGCGAGCCAAAGAACAGAAAAACAGTcatcaaaaagtttaattttaatcataaacTGAAAAGACACACTGATCCAGCACGTGGTAATATAACCCTTCCTTGTGATACTTGTGGAAAGGCATTCagacaacaaaaatttctcaaagcCCATATCGACTCGGTGCACCATAAAATCACTCATGCCTGTGACACATGCGGAAAGACGTTCTCTCGCAAGAGTGTTCTCAAAATACACATCGATGCGATACATAATGGTAAAACATATGCATGCGATATCTGCGGAAAGACGTGTACTCAAAAAAGTTCTCTCCAAACCCACATCAACTCGGTTCATAATAGTCAAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCGAAAGGATGTTCTGAAAACTCATACCGATTCCATGCATAAAGGCATCACCTACCCATGTGATTTTTGCGGAAAGGCGTTCTCGCTCAAGGGTAATCTCCAAACCCACATCAACTCGGttcataataatcaaaaaaataacgaatgtGACGTGTGTGGCAAGAAGTTCTCACAAAAGGGTACTCTGAAAACTCATATCGATACgatgcataatggtatcaccTACCCATGCGATAGTtgcggaaagacattttcCCAAAAAGGTAATTTGAAATCTCATATCGATTCGACTCATAACAATATCAGACATGAATGTGATACATGTGAAAAGTCATTCTCACATAAAAGTTACCTCAAAACACATATTGAAGCGATACATAATGGTAAAACTCCCACATGCGATATCTGCGGAAAGAAGTTCTCTAAAAAGAGCAATCTTAAAATACACATCGATGCGATACATAATGGTAAAACATATGCATGCGATATCTGCGGAAAGACGTGTACTAAAAAGAGTCATCTCCAAACCCACATCAACTCGGTTCATAATAGTCAAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCAAAAGGGTACTCTGAAAACTCATACTGATTCGATCCATAAAGGCATCACCTACCCATGCGATTTTtgcggaaagacattttcCCAAGAAAGGAATTTGAAATCTCATATCGATTCGACTCATAACAATATCAGGCATGAATGTGATACATGTGAAAAGTCATTCTCACATAAAAGTTACCTCAAACATATTGAAGCGATACATAATGGTAAAACTCCCACATGCGATATCTGCGGAAAGAAGTTCTCTAAAAAGAGCACTCTTAAAATACACATCGATGCGATACATAATGGTAAAACATATGCATGCGATATCTGCGGAAAGACGTGTACTCAAAAGAGTCATCTCCAAACCCACATCAACTCGGTTCATAATAGTCAAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCGAAAGTATGTTCTGAAAACTCATACCGATTCCATGCATAAAGGCATCACCTACTCACGTGATTATGTGGAAAGCTATTAA
Protein Sequence: MESSEMFNCDIRVKEEPIDVLLGENDYIVIDKTPDVNNFQLLRHPQENRIQKSDDNHESELDDLAIELECKEMKPNVDLLAVTKIENWSEDHLVAIENSNEYKTQNIIKLEALDAVKKESLVNDVNQLNINSNCKISEPKNRKTVIKKFNFNHKLKRHTDPARGNITLPCDTCGKAFRQQKFLKAHIDSVHHKITHACDTCGKTFSRKSVLKIHIDAIHNGKTYACDICGKTCTQKSSLQTHINSVHNSQKSYECDVCGKKFSRKDVLKTHTDSMHKGITYPCDFCGKAFSLKGNLQTHINSVHNNQKNNECDVCGKKFSQKGTLKTHIDTMHNGITYPCDSCGKTFSQKGNLKSHIDSTHNNIRHECDTCEKSFSHKSYLKTHIEAIHNGKTPTCDICGKKFSKKSNLKIHIDAIHNGKTYACDICGKTCTKKSHLQTHINSVHNSQKSYECDVCGKKFSQKGTLKTHTDSIHKGITYPCDFCGKTFSQERNLKSHIDSTHNNIRHECDTCEKSFSHKSYLKHIEAIHNGKTPTCDICGKKFSKKSTLKIHIDAIHNGKTYACDICGKTCTQKSHLQTHINSVHNSQKSYECDVCGKKFSRKYVLKTHTDSMHKGITYSRDYVESY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01482694;
90% Identity: iTF_01482694;
80% Identity: iTF_01482694;