Tden002840.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000004.1:4584685-4587013[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.5e-05 0.00091 20.3 1.7 1 23 159 182 159 182 0.94 2 20 0.0085 0.31 12.3 2.6 2 23 188 210 187 210 0.91 3 20 4.5e-06 0.00017 22.6 4.4 1 23 215 238 215 238 0.96 4 20 1.7e-05 0.00062 20.8 0.9 3 23 245 266 245 266 0.96 5 20 2.9e-06 0.00011 23.3 1.5 1 23 271 294 271 294 0.95 6 20 1.4e-05 0.0005 21.1 1.4 3 23 301 322 301 322 0.96 7 20 3e-06 0.00011 23.2 0.4 1 23 327 350 327 350 0.95 8 20 0.14 5.1 8.5 3.4 1 23 355 378 355 378 0.86 9 20 4.4e-06 0.00016 22.7 0.6 1 23 383 406 383 406 0.95 10 20 1.2e-05 0.00044 21.3 0.3 3 23 413 434 412 434 0.93 11 20 1.8e-06 6.7e-05 23.9 0.6 1 23 439 462 439 462 0.96 12 20 0.00039 0.014 16.6 1.6 1 23 467 490 467 490 0.96 13 20 4.4e-06 0.00016 22.7 0.6 1 23 495 518 495 518 0.95 14 20 6.6e-06 0.00024 22.1 0.4 3 23 525 546 524 546 0.95 15 20 1.2e-06 4.4e-05 24.5 2.1 1 23 551 574 551 574 0.95 16 20 7e-06 0.00026 22.0 0.4 1 23 579 602 579 602 0.96 17 20 1.3e-06 4.9e-05 24.3 1.2 1 23 607 630 607 630 0.94 18 20 0.00039 0.014 16.6 1.6 1 23 635 658 635 658 0.96 19 20 1.5e-06 5.3e-05 24.2 0.5 1 23 663 686 663 686 0.95 20 20 4.9e-06 0.00018 22.5 0.4 3 23 693 714 692 714 0.96
Sequence Information
- Coding Sequence
- ATGGAATCAAGTGATATGCTTAATTCTATTGTGagAGTAAAGGACGAACCCATTGATGTCtcatttcatgaaaatgattgTGAAATGACTGTCGATGTTAAAAACGTCCGACTCTTACCATGTCCACAAGAAACTTCAACTCACATGATTCGAGAATATGAGGAAAATCGAGAAGCTGATATAAATGACGAAATGGAGATTGAATTCGAGTGTGTAGATGTCAAGCTCACTATGGATTTATTAAAAGATAAGAAATCCGACGATTATTCTCGAAATTACTTGCACCTTACGAAAAATAGCTACGATTATCagatgcaaaataaaattaaaattgaaactttgaaggaagtgaaaaaagaagtgaatttgaattttgattgtAAACTCAAcgaggaaaatgaaaaaaggaatgACACTGAAAAGTTAAAAGACAGTTTTAAAATACACACCAAAAAGGTTCGTATCGATGCCACCCATACTTGTGATACATGTGGTAACACATTTACCCAACAGCAAAGTCTCCAACGTCACATGGATTTGGTACATGATAAAATCACTCTTGAATGcaatatttgcggaaagaaatacGTACATAAGACAAGTCTCAAATGCCACATCGTTTCagtgcataataaaatcattcacgaatgtgatatttgcggaaaaaaatactcacatAAGAGTGATCTCAAGAAACACATCCATGTGGCGCACAATGGAGTGACAAACGGGTGTGATTTTTGTGGTAAAAAATTCTCGACGAAGaataatctcaaaatccacatcgattcagtgcataataaaatcattcatgaatgtgatatttgcggaaaaaaatactcacatAAGGGTGATCTCAAGAAACACATCGATGTGGCGCACAATGGAGTGACAAACGGGTGTAATTTTTGTGGTAAAAAATTCTCGACGAAGAgaaatctcaaaatccacatcgattcagtgcataataaaatcattcatgaatgtgatatttgcggaaagaaattctcaGGCAAGTGGAATCTCAAGAATCACATCGATGTGGCGCACAATGGCGTCGTACATAGCTGTAAGACTTGTGGTAAGACATTTGCACGACTGAATATTCTCAAATGCCATATCAATTCGATACATGACAAAATCCCtcatgaatgtgatatttgcggaaagaagtACTCACAGAAGGGTTATCTCAAAAATCACATCGATGTGGCGCACAGTGGAGTCCCAAACGCATGTGATCTTTGTGGGAAAAAATTCTCGACAAAGaataatctcaaaatccacatcgatttggtacataataaaatcattcataaatgtgatatttgcggaaagaaattctcaGGCAAGTGGAATCTCAAGAATCACATCGATGTGGCGCACAATGGCGTCGTACATAGCTGTAAGACTTGTGGTAAGACATTTGCACAAGTGTATATTCTCAAACGCCATATCAATTCGGTACATGataaaatcactcatgaatgtgatatttgcggaaagaagtACTCACAGAAGGGTTATCTCAAAAATCACATCGATGTGGCGCACAATGGAGTCCCAAACGCATGTGATCTTTGTGGGAAAAAATTCTCGACAAAGaataatctcaaaatccacatcgattcggtacataataaaatccctcatgaatgtgatatttgcggaaaaaaatactcacatAAGAGTGATCTCAAGAAACACATCGATGTGGCGCACAATGGTACCACCCATACCTGTGATACGTGTGGTAAGACATTTGCACAAATAGGTAATCTCGTACGCCATATCAATTTGGTACATGACAAAATCACtcatgaatgtgatatttgcggaaaaaaattctcagaCAAGAGTTATCTCAAGAATCACACCGATGTggcgcacaatggtgtcataCATAGCTGTAAGACTTGTGGTAAGACATTTGCACAAGTGTATATTCTCAAACGCCATATCAATTCGGTACATGataaaatcactcatgaatgtgatatttgcggaaagaagtACTCACAGAAAGGtgatctcaaaaaacacatcgatgtgGCGCACAATGGAGTCCCAAACGCATGTGATCTTTGTGGGGAAAAATTCTCGACGAAGAGTAATCTCATCAAACAcacaatggtgtcacacatGCATGTAATGTGTGCCAAAAGAAATTCTTAA
- Protein Sequence
- MESSDMLNSIVRVKDEPIDVSFHENDCEMTVDVKNVRLLPCPQETSTHMIREYEENREADINDEMEIEFECVDVKLTMDLLKDKKSDDYSRNYLHLTKNSYDYQMQNKIKIETLKEVKKEVNLNFDCKLNEENEKRNDTEKLKDSFKIHTKKVRIDATHTCDTCGNTFTQQQSLQRHMDLVHDKITLECNICGKKYVHKTSLKCHIVSVHNKIIHECDICGKKYSHKSDLKKHIHVAHNGVTNGCDFCGKKFSTKNNLKIHIDSVHNKIIHECDICGKKYSHKGDLKKHIDVAHNGVTNGCNFCGKKFSTKRNLKIHIDSVHNKIIHECDICGKKFSGKWNLKNHIDVAHNGVVHSCKTCGKTFARLNILKCHINSIHDKIPHECDICGKKYSQKGYLKNHIDVAHSGVPNACDLCGKKFSTKNNLKIHIDLVHNKIIHKCDICGKKFSGKWNLKNHIDVAHNGVVHSCKTCGKTFAQVYILKRHINSVHDKITHECDICGKKYSQKGYLKNHIDVAHNGVPNACDLCGKKFSTKNNLKIHIDSVHNKIPHECDICGKKYSHKSDLKKHIDVAHNGTTHTCDTCGKTFAQIGNLVRHINLVHDKITHECDICGKKFSDKSYLKNHTDVAHNGVIHSCKTCGKTFAQVYILKRHINSVHDKITHECDICGKKYSQKGDLKKHIDVAHNGVPNACDLCGEKFSTKSNLIKHTMVSHMHVMCAKRNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482657;
- 90% Identity
- iTF_01482657;
- 80% Identity
- iTF_01482657;