Tden002840.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000004.1:4584685-4587013[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.8 3.4e+02 2.1 0.5 16 41 158 180 144 183 0.75 2 20 0.043 8.4 7.3 7.3 17 44 187 211 176 211 0.83 3 20 0.046 8.9 7.2 4.3 18 44 216 239 212 239 0.91 4 20 0.0032 0.62 10.9 0.3 19 44 245 267 242 267 0.93 5 20 0.051 10 7.0 1.4 18 43 272 294 269 299 0.79 6 20 0.0014 0.28 12.0 0.6 19 44 301 323 296 323 0.93 7 20 0.0023 0.45 11.4 0.5 18 44 328 351 324 351 0.91 8 20 2 4e+02 1.9 3.2 18 43 356 378 353 379 0.80 9 20 0.72 1.4e+02 3.4 5.2 18 43 384 406 372 407 0.78 10 20 0.043 8.4 7.3 0.5 18 43 412 434 410 435 0.86 11 20 0.0014 0.28 12.0 0.4 18 44 440 463 435 463 0.90 12 20 0.076 15 6.5 0.6 18 43 468 490 465 491 0.92 13 20 0.037 7.2 7.5 0.8 18 43 496 518 493 519 0.76 14 20 0.0042 0.82 10.5 0.2 18 44 524 547 522 547 0.93 15 20 0.0061 1.2 10.0 1.0 18 44 552 575 551 575 0.92 16 20 0.063 12 6.7 0.4 17 43 579 602 575 603 0.88 17 20 0.16 31 5.5 0.6 18 37 608 624 604 631 0.77 18 20 0.2 39 5.1 2.4 18 43 636 658 620 659 0.88 19 20 0.024 4.8 8.1 0.5 18 43 664 686 661 687 0.81 20 20 0.19 37 5.2 1.7 18 38 692 709 690 719 0.79
Sequence Information
- Coding Sequence
- ATGGAATCAAGTGATATGCTTAATTCTATTGTGagAGTAAAGGACGAACCCATTGATGTCtcatttcatgaaaatgattgTGAAATGACTGTCGATGTTAAAAACGTCCGACTCTTACCATGTCCACAAGAAACTTCAACTCACATGATTCGAGAATATGAGGAAAATCGAGAAGCTGATATAAATGACGAAATGGAGATTGAATTCGAGTGTGTAGATGTCAAGCTCACTATGGATTTATTAAAAGATAAGAAATCCGACGATTATTCTCGAAATTACTTGCACCTTACGAAAAATAGCTACGATTATCagatgcaaaataaaattaaaattgaaactttgaaggaagtgaaaaaagaagtgaatttgaattttgattgtAAACTCAAcgaggaaaatgaaaaaaggaatgACACTGAAAAGTTAAAAGACAGTTTTAAAATACACACCAAAAAGGTTCGTATCGATGCCACCCATACTTGTGATACATGTGGTAACACATTTACCCAACAGCAAAGTCTCCAACGTCACATGGATTTGGTACATGATAAAATCACTCTTGAATGcaatatttgcggaaagaaatacGTACATAAGACAAGTCTCAAATGCCACATCGTTTCagtgcataataaaatcattcacgaatgtgatatttgcggaaaaaaatactcacatAAGAGTGATCTCAAGAAACACATCCATGTGGCGCACAATGGAGTGACAAACGGGTGTGATTTTTGTGGTAAAAAATTCTCGACGAAGaataatctcaaaatccacatcgattcagtgcataataaaatcattcatgaatgtgatatttgcggaaaaaaatactcacatAAGGGTGATCTCAAGAAACACATCGATGTGGCGCACAATGGAGTGACAAACGGGTGTAATTTTTGTGGTAAAAAATTCTCGACGAAGAgaaatctcaaaatccacatcgattcagtgcataataaaatcattcatgaatgtgatatttgcggaaagaaattctcaGGCAAGTGGAATCTCAAGAATCACATCGATGTGGCGCACAATGGCGTCGTACATAGCTGTAAGACTTGTGGTAAGACATTTGCACGACTGAATATTCTCAAATGCCATATCAATTCGATACATGACAAAATCCCtcatgaatgtgatatttgcggaaagaagtACTCACAGAAGGGTTATCTCAAAAATCACATCGATGTGGCGCACAGTGGAGTCCCAAACGCATGTGATCTTTGTGGGAAAAAATTCTCGACAAAGaataatctcaaaatccacatcgatttggtacataataaaatcattcataaatgtgatatttgcggaaagaaattctcaGGCAAGTGGAATCTCAAGAATCACATCGATGTGGCGCACAATGGCGTCGTACATAGCTGTAAGACTTGTGGTAAGACATTTGCACAAGTGTATATTCTCAAACGCCATATCAATTCGGTACATGataaaatcactcatgaatgtgatatttgcggaaagaagtACTCACAGAAGGGTTATCTCAAAAATCACATCGATGTGGCGCACAATGGAGTCCCAAACGCATGTGATCTTTGTGGGAAAAAATTCTCGACAAAGaataatctcaaaatccacatcgattcggtacataataaaatccctcatgaatgtgatatttgcggaaaaaaatactcacatAAGAGTGATCTCAAGAAACACATCGATGTGGCGCACAATGGTACCACCCATACCTGTGATACGTGTGGTAAGACATTTGCACAAATAGGTAATCTCGTACGCCATATCAATTTGGTACATGACAAAATCACtcatgaatgtgatatttgcggaaaaaaattctcagaCAAGAGTTATCTCAAGAATCACACCGATGTggcgcacaatggtgtcataCATAGCTGTAAGACTTGTGGTAAGACATTTGCACAAGTGTATATTCTCAAACGCCATATCAATTCGGTACATGataaaatcactcatgaatgtgatatttgcggaaagaagtACTCACAGAAAGGtgatctcaaaaaacacatcgatgtgGCGCACAATGGAGTCCCAAACGCATGTGATCTTTGTGGGGAAAAATTCTCGACGAAGAGTAATCTCATCAAACAcacaatggtgtcacacatGCATGTAATGTGTGCCAAAAGAAATTCTTAA
- Protein Sequence
- MESSDMLNSIVRVKDEPIDVSFHENDCEMTVDVKNVRLLPCPQETSTHMIREYEENREADINDEMEIEFECVDVKLTMDLLKDKKSDDYSRNYLHLTKNSYDYQMQNKIKIETLKEVKKEVNLNFDCKLNEENEKRNDTEKLKDSFKIHTKKVRIDATHTCDTCGNTFTQQQSLQRHMDLVHDKITLECNICGKKYVHKTSLKCHIVSVHNKIIHECDICGKKYSHKSDLKKHIHVAHNGVTNGCDFCGKKFSTKNNLKIHIDSVHNKIIHECDICGKKYSHKGDLKKHIDVAHNGVTNGCNFCGKKFSTKRNLKIHIDSVHNKIIHECDICGKKFSGKWNLKNHIDVAHNGVVHSCKTCGKTFARLNILKCHINSIHDKIPHECDICGKKYSQKGYLKNHIDVAHSGVPNACDLCGKKFSTKNNLKIHIDLVHNKIIHKCDICGKKFSGKWNLKNHIDVAHNGVVHSCKTCGKTFAQVYILKRHINSVHDKITHECDICGKKYSQKGYLKNHIDVAHNGVPNACDLCGKKFSTKNNLKIHIDSVHNKIPHECDICGKKYSHKSDLKKHIDVAHNGTTHTCDTCGKTFAQIGNLVRHINLVHDKITHECDICGKKFSDKSYLKNHTDVAHNGVIHSCKTCGKTFAQVYILKRHINSVHDKITHECDICGKKYSQKGDLKKHIDVAHNGVPNACDLCGEKFSTKSNLIKHTMVSHMHVMCAKRNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482787;
- 90% Identity
- iTF_01482787;
- 80% Identity
- iTF_01482787;