Tbra005799.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- KCNIP1
- Assembly
- GCA_902806795.1
- Location
- CADCXV010001016.1:465850-490180[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00066 2.2 8.4 0.0 23 48 211 236 202 242 0.86 2 10 1.3 4.4e+03 -2.2 0.0 23 43 240 260 237 266 0.71 3 10 0.0012 4.1 7.5 0.1 23 48 269 294 263 300 0.87 4 10 0.35 1.2e+03 -0.4 0.0 23 44 298 319 295 328 0.75 5 10 0.0046 15 5.7 0.5 26 49 330 353 324 357 0.88 6 10 0.0041 14 5.8 0.0 26 49 359 382 353 385 0.91 7 10 0.047 1.6e+02 2.4 0.1 23 48 414 439 407 444 0.85 8 10 0.0049 17 5.6 0.0 23 48 443 468 439 474 0.87 9 10 0.39 1.3e+03 -0.5 0.0 23 42 472 491 469 499 0.73 10 10 0.015 51 4.0 0.2 22 48 500 526 496 529 0.88
Sequence Information
- Coding Sequence
- ATGAAAACGACACTTATCAACAAGACAATATCATGGACTACCATCAGCCATCGAATGACGATGTTTCAAACACTGAACCGAATAGTGAAGAACCACAAAATGAAAACGACACTTATTCACAAGACAATATCATGGACTGCCATCAACCATCGTGCAGTGGAGGACTTCGTGACGGGCCTGTCGATCCTGTCCAGGGGCTCGCTCGAGGAGAAGCTGCGCTGGACCTTCTCGCTGTACGACATCAACGGCGACGGCTGCATAACGCGCGAGGAGATGACCGACATCGTCACCGCCGTCTACGAGCTCATGGGCAAGTTCGCCGATCCGAATCTTAATCAGAATCACGAGGGCGTCAGGCAGAGGGTCGATCGAATGTTTCAGGTTTGTCGGTTTACGAATAAacattactttatttatttttttggtgttgTTTACCTCATATTTGTGTACATGTGTTTCgcaacgaaaatatatataaacatacGCGGTATAGAAGCTCGAATTTCTGTGTACCAcgggtacacacacacacgttgcataaaaacTTACAAAGGAAAAATGATTCCAAAAAGACAAATCAATCTAGCATACAAGAGCATTACATGCGAGAAGCAAGGACATAATAAGAGCGAACCCTTccaatgtgatatttgtcacaaatcgtttggacaaaaaagtgacCTCAAGCGGCACGTAAGTGTGGTACATAATagaagcaaacccttcgaatgtgaaatttgtcacaaatcatttggataccagaatGTACTCAAAAGTCATATGATGACGGTACATgatcgaagcaaacccttccaatgtgatatttgccacaaatcgtttggacaaaaaagtgacCTCCAGCGGCACGTAAGTGTGGTACATAATagaagcaaacccttcgaatgtgagatatGTCACAAAGTATTTTCGTCCAAGGCTCACGTCGATATTCATATTGATACAATACATAATGGTAACAAATCACacgagtgtgaaatttgtcacaaatcatttggacaaaaatgcaACCTTATACGTCACATAAACGAGGTACATTATCGTAGCAAaaccttcgaatgtgaaatttgtcacaaatcgtttggacaaaaaggtgaCCTCAAGCGGCATGTAAGTGTGGTACATTATAGAAGCAAactcttcgaatgtgagatttgtcacaataCATATGGCCGCAAAGATGTCCTTAAGTCCCACATAAAGACAGTTCATAATCGAATGAAACCCtccgaatgtgagatttgcaAGAAATCATATTCACACCGAGGTAATCTCAATAAGCACATAAAAACAATACATGATCTtagtaaacccttcgaatgtgagatatGTCACAAATCGTTTGGGCAAAAATTCAACCTCAAAagtcacataaatgcagtacataatagaagcaaacccttcgaatgtgagatatGTCACAAAGTATTTTCGTCCAAGGCTTACGTCAATATCCACATTGATGCAATACATAATGGTAACAAACCAcacgagtgtgagatttgtcacaaatcattttcacacCAAGCCAACCTCAAAagtcacataaatgcagtacacgaatttttcatcgcaATCGTCGAATTCGGACCATGTTCTGGAGTACTCAAGTTCATACGAGCCGCCGCGGTGTGCGCGTCGTGTGATCTGGCGTACAGCagcaccaccgccgccgccgcgcgaaACGCAATTATATTTCCGCAGATTATAtggcgtatacaaaCGAAGAAGCGACGACAGGTGAGCATCGATTGTAATTCAGCCGCGGCCGGAAGTCGCTCGAAGTTACGATTGggaatttttctaataaaactAACAAAACaggataaaaaaagagagaaataTCTGTACGAACAAGTCCAAAGAGATTCTATGTAA
- Protein Sequence
- MKTTLINKTISWTTISHRMTMFQTLNRIVKNHKMKTTLIHKTISWTAINHRAVEDFVTGLSILSRGSLEEKLRWTFSLYDINGDGCITREEMTDIVTAVYELMGKFADPNLNQNHEGVRQRVDRMFQVCRFTNKHYFIYFFGVVYLIFVYMCFATKIYINIRGIEARISVYHGYTHTRCIKTYKGKMIPKRQINLAYKSITCEKQGHNKSEPFQCDICHKSFGQKSDLKRHVSVVHNRSKPFECEICHKSFGYQNVLKSHMMTVHDRSKPFQCDICHKSFGQKSDLQRHVSVVHNRSKPFECEICHKVFSSKAHVDIHIDTIHNGNKSHECEICHKSFGQKCNLIRHINEVHYRSKTFECEICHKSFGQKGDLKRHVSVVHYRSKLFECEICHNTYGRKDVLKSHIKTVHNRMKPSECEICKKSYSHRGNLNKHIKTIHDLSKPFECEICHKSFGQKFNLKSHINAVHNRSKPFECEICHKVFSSKAYVNIHIDAIHNGNKPHECEICHKSFSHQANLKSHINAVHEFFIAIVEFGPCSGVLKFIRAAAVCASCDLAYSSTTAAAARNAIIFPQIIWRIQTKKRRQVSIDCNSAAAGSRSKLRLGIFLIKLTKQDKKREKYLYEQVQRDSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481743;
- 90% Identity
- iTF_01481743;
- 80% Identity
- iTF_01481743;