Tbra001572.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000767.1:321641-323953[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.025 83 3.3 0.4 23 48 204 229 198 233 0.86 2 13 0.17 5.7e+02 0.7 0.1 22 48 261 287 251 293 0.80 3 13 0.15 5.1e+02 0.8 0.0 23 48 291 316 286 319 0.88 4 13 0.0081 27 4.9 0.2 23 48 320 345 314 350 0.85 5 13 0.035 1.2e+02 2.9 0.1 23 48 349 374 345 379 0.87 6 13 0.003 10 6.2 0.0 23 48 378 403 375 409 0.89 7 13 0.36 1.2e+03 -0.4 0.0 22 48 406 432 403 438 0.80 8 13 0.19 6.4e+02 0.5 0.0 23 48 436 461 421 467 0.83 9 13 0.029 98 3.1 0.0 23 48 465 490 458 495 0.84 10 13 0.00011 0.36 10.9 0.1 22 48 493 519 487 525 0.85 11 13 0.61 2.1e+03 -1.1 0.1 22 46 522 546 516 553 0.76 12 13 0.01 34 4.6 0.0 23 47 552 576 546 582 0.86 13 13 6.7e-05 0.23 11.6 0.0 23 48 581 606 576 609 0.92
Sequence Information
- Coding Sequence
- ATGGAAAGCAAAGAGGATACAGTCagTGTGAAGAAAGAACTGGATGATGATAGGCCAGATGCACGCGATTATGGCAATTTCGATTCGGTGGAAGCTGCAGCAAACTTTGAAACATTCTCGTTTTTTAAATCATCTgtGAAACTCGAGAATGAGGCGAGAATGAGGTTAAACGAAAAGttggataaaaatattatacctgTAGAATTtgagtgcaaaaatgttaaactcGAACTGCTGCCTCTACCGGCAACCATTTGTAAAACTGAGTATAAAAGTTGCCTACCTAtcgtgaaaattgaaaacgatAATAAGACCAATgacacgaatgaaaatatatctatcgactttgagtgcaaagatgttaaatCTGAATTGAAGTCTGAATCGATGGCAAATTGCAAATCTGAGTATCAAAGTTGTGTACCTATAATGTATGAAGAAAACCAAATGCAGACGAAGTATTTGAATGATAAAGTAAAAGCGAGATTAAATACGAATATCACTATggcgaatgaaaaaagtacagcATATAGAGATGATATTTACAACAGATCATTAGGATACCAAAACAAACTCAAAGGGCACATATTGACGGAACATCATCGAAGCAAGCCCATCggatgtgaaatttgtcataaatcgtTCAATTACCAAAGCTACCTCAAACGTCACGTCAATACAGTGCATGATCATTGCaaatcctttgaatgtgacgTATGTCACAAGTCTTTTGCACATAAAAGTAGCCTCAAAACTCACGTAAATTCAATACACGATCATAagaaaccctttgaatgtgagatttgtcacaaatcatttggttaCCAACATACGctcaaaactcacatcaaTTCTGTACATAATcttagcaaacccttcgagtgtggaatttgtcagaaatcatttggactaaataGTTACCTCAAAAGACACATtgatacagtacataatcgtagccAACGCTTTGGATGTGACATTTGTTGCAAATCATATGGAGAAAAACGAAACctcaaaaatcatataagtgtagtacatgatcgaagcaaacccttcgagtgtggaatttgtcataaatcatttgctTACAAACGTACTCTCAAagatcacataaatgcagtacataatcgcaTCAAACCTttcaaatgtgacatttgtcacaaatcatttggagaaaaaggtAATCTCAAACGTCACAtcaatacagtacatgatcgagacaaacccttcgaatgtgagatttgtcacaaatcatttggaaccAAGAGTAAGCTTAACAAACACAAACAAGTTGtgcatgatcgtagcaaacccttcgagtgtgatatttgtcagaaatcatttggactaaaggGCAATCTCCAAAGTCACATCAATTCTGTACATAATCtcagcaaacccttcgagtgtggaatttgtcacaaatcattttcaagcaagaataacctcaaaactcacgtAAGTTCAATACACGATCATAagaaaccctttgaatgtgagatttgttacaaatcatttAGACAAAAGGGTaccctcaaaactcacatcaattctgtacataatcgtagcaaacccttcgagtgtggaatttgtcataaatcatttggatacaaatgtACTCTCAAAGATCACATAAATGCAATACATAATCGCATCAAACCTttcaaatgtgacatttgtcacaaatcatttggggTAAAAAGTAACCTCAGAAAGCACATAATTACAGTACACAATCagatcaaaccctttgaatgtgatgtttgttataaatcatttggacaaaatagTAATCTTAGTAAGCACATAAATTTAGTACACAATCGGAACAAACGCTAG
- Protein Sequence
- MESKEDTVSVKKELDDDRPDARDYGNFDSVEAAANFETFSFFKSSVKLENEARMRLNEKLDKNIIPVEFECKNVKLELLPLPATICKTEYKSCLPIVKIENDNKTNDTNENISIDFECKDVKSELKSESMANCKSEYQSCVPIMYEENQMQTKYLNDKVKARLNTNITMANEKSTAYRDDIYNRSLGYQNKLKGHILTEHHRSKPIGCEICHKSFNYQSYLKRHVNTVHDHCKSFECDVCHKSFAHKSSLKTHVNSIHDHKKPFECEICHKSFGYQHTLKTHINSVHNLSKPFECGICQKSFGLNSYLKRHIDTVHNRSQRFGCDICCKSYGEKRNLKNHISVVHDRSKPFECGICHKSFAYKRTLKDHINAVHNRIKPFKCDICHKSFGEKGNLKRHINTVHDRDKPFECEICHKSFGTKSKLNKHKQVVHDRSKPFECDICQKSFGLKGNLQSHINSVHNLSKPFECGICHKSFSSKNNLKTHVSSIHDHKKPFECEICYKSFRQKGTLKTHINSVHNRSKPFECGICHKSFGYKCTLKDHINAIHNRIKPFKCDICHKSFGVKSNLRKHIITVHNQIKPFECDVCYKSFGQNSNLSKHINLVHNRNKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481719;
- 90% Identity
- iTF_01481719;
- 80% Identity
- iTF_01481719;