Tbra003842.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000699.1:605349-607796[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.6e-06 0.00011 22.3 3.4 1 23 187 210 187 210 0.96 2 19 1.9e-05 0.00081 19.6 1.0 1 23 216 239 216 240 0.95 3 19 3.1e-06 0.00013 22.1 0.9 3 23 246 267 245 267 0.97 4 19 3.8e-06 0.00016 21.8 3.2 1 23 272 295 272 295 0.96 5 19 1.5 62 4.3 5.0 1 17 300 316 300 326 0.84 6 19 6.9e-06 0.00029 21.0 1.6 1 23 326 349 326 350 0.94 7 19 1.1e-05 0.00045 20.4 1.8 1 23 354 377 354 377 0.95 8 19 1.5e-07 6.4e-06 26.3 1.1 1 23 382 405 382 405 0.94 9 19 0.015 0.62 10.6 1.5 1 23 410 433 410 434 0.91 10 19 4.3e-06 0.00018 21.7 1.5 1 23 438 461 438 461 0.91 11 19 6.3e-08 2.7e-06 27.4 1.6 1 23 466 489 466 489 0.95 12 19 1.3e-06 5.4e-05 23.3 0.5 1 23 494 517 494 517 0.95 13 19 3.4e-05 0.0015 18.8 1.1 1 23 522 545 522 546 0.93 14 19 4.5e-06 0.00019 21.6 0.9 3 23 552 573 551 573 0.96 15 19 4.5e-06 0.00019 21.6 2.8 1 23 578 601 578 601 0.97 16 19 1.9e-05 0.00079 19.7 1.5 1 23 606 629 606 630 0.94 17 19 2.7e-05 0.0012 19.1 1.9 1 23 634 657 634 657 0.93 18 19 6.4e-05 0.0027 18.0 1.7 1 23 662 685 662 685 0.94 19 19 2e-06 8.4e-05 22.7 1.0 1 23 690 713 690 713 0.96
Sequence Information
- Coding Sequence
- ATGGAATCGAGCAACGTATTCAATCCAACCGTtagAATTAAAGAGGAAATAACGGATCAGTCGCTCATGGAGTATGATGATTACGACATAATGAACGAGGCATCCGACAGcaaaaatttccaattctCAAGTGTTAAGCGGGAAAATTCTATCAATGAGATTCAAAAGTTTGAACAAAATCATGATTACGAACTTGACGACGACCTGCACGTAGAATTTGAATGTCAGGACGTGAAGATAGACGTAAATTCATCGGTGATCAGGAAAATTGACGATTGTTCTCAACGATACTCGCAAGACACGATTAAAATAGAGACTGCGGGAGTCGTGAAAGAAGAATTAGTTGCTGACGATTCGGAAGATTTGAATGCAAATGTCGAAGGCGAGCTCGGCCAGAGacataaaattgcaaaagAGGTCAATCGTGGAAATAAACTCAGAACAAATATTGATGTGGCGAATAATAGTATTGCTCGAGCTTGCGATAAGCGCGAAAAGACATTCATGCGAAAGAGACCTCTGGAAGTCCACCCAAATAGTGTTCATGATGATATCACTCATCCATGTCATATTTGTGGAAAGTCATTCGGACAAAAGagttatctcaaaatccacacgAATAGGCTCCACAATAATTTTAAGCATTACCAGTGTGACGATTGTCAAAAGTTATTCACTACAAAAGCAGATCTAAAAATTCACGtcgattcggtgcatcatAAAATAAGGCATGGATGTGATACTTGTGGAAAATCATTCAGACAAAAGGTTCATCTAAAGGTCCACATCGAGTCGGTGCATCGTAAAATTAGGCATCCGTGcgatatatgccaaaagacattcgCACATAAAAGGagtctcaaaaaacacatcgaaacggtgcataatggtgtcacacatgaatgcgatatttgcggaaaTGATTTTAAACGAAGATGCGATCTTAAAACTCAACTCATGCATCATAAAATAAGGCATGCATGTGATATGTGCGAAAAGACATACTCAGACAAGAGTAGTCTCAAAAagcacatcgattcggtgcatcatAAAATCATGCATCCATGTAATAAATGCCAAAAGACATTTTCAGAAAGAGGTAGTCTAAAAAggcacatcgattcggtgcacaaGCGAGTCGGGCATGCATGTActatatgccaaaagacattctcagACAAGAGTAATCTTAAAGCTCACATTAAAGCGATTCACAGTGGTGCCAGCCATGCAtgcgatatttgcggaaaTGTTTTTAAACGAAGAGGAATTCTCAAAACTCATGTCAATTTTGTGCATCATAAAATTACGCAtccatgtgatatatgccaaaagacattcacacagAAAAGgaatctcaaaatccacatcgattttGTGCACAACAAAATCACGCATCCATGTAATAaatgccaaaagacattctcagACAAGAGTAATCTTAAAGCTCACATTAGAGCGATTCACAATGGTGTCAGACATGAAtgcgatatttgcggaaagataTTCTCACTAaaaggtaatctcaaaaagcacatcgattcggtgcataatggcgTCAGTCACGCAtgcgatatttgcggaaaTGTTTTTAAACGAAGAAGCGATCTCAAAATTCACGtcgattcggtgcatcatAATATAAGGCATGGATGTGATACTTGTGGAAAATCATTCAGACAAAAGGTTCATCTAAAGgtccacatcgattcagtgcatCGTAAAATTAGGCATCCATGcgatatatgccaaaagaTATTCGCACATAAAACGagtctcaaaaaacacatccaaacggtgcataatggtgtcacacatgaatgcgatatttgcggaaaTGTTTTTAAACGAAGAAGCGATCTCAAAATTCACGTCGATTCGTTGCATCATAAAATAAGgcatgcatgtgatatatgccaaaagacattcgCACAAAAGGGccatctcaaaatccacaccgattcggtgcataataaaatcatgcacacatgtgatatatgccaaaagacataCTCAGGCAAGAGTCGTCTCAAAAGACATATCGTTTCGGTGCATCGTAAAATCACGTACacgtgtgatatttgcggaaaaaaGTTCACAGAGAAGAGtgatgtaaaaaaacacatcgatagTAAGCACAATGGTGACACTCGCGCACATACAActaaataa
- Protein Sequence
- MESSNVFNPTVRIKEEITDQSLMEYDDYDIMNEASDSKNFQFSSVKRENSINEIQKFEQNHDYELDDDLHVEFECQDVKIDVNSSVIRKIDDCSQRYSQDTIKIETAGVVKEELVADDSEDLNANVEGELGQRHKIAKEVNRGNKLRTNIDVANNSIARACDKREKTFMRKRPLEVHPNSVHDDITHPCHICGKSFGQKSYLKIHTNRLHNNFKHYQCDDCQKLFTTKADLKIHVDSVHHKIRHGCDTCGKSFRQKVHLKVHIESVHRKIRHPCDICQKTFAHKRSLKKHIETVHNGVTHECDICGNDFKRRCDLKTQLMHHKIRHACDMCEKTYSDKSSLKKHIDSVHHKIMHPCNKCQKTFSERGSLKRHIDSVHKRVGHACTICQKTFSDKSNLKAHIKAIHSGASHACDICGNVFKRRGILKTHVNFVHHKITHPCDICQKTFTQKRNLKIHIDFVHNKITHPCNKCQKTFSDKSNLKAHIRAIHNGVRHECDICGKIFSLKGNLKKHIDSVHNGVSHACDICGNVFKRRSDLKIHVDSVHHNIRHGCDTCGKSFRQKVHLKVHIDSVHRKIRHPCDICQKIFAHKTSLKKHIQTVHNGVTHECDICGNVFKRRSDLKIHVDSLHHKIRHACDICQKTFAQKGHLKIHTDSVHNKIMHTCDICQKTYSGKSRLKRHIVSVHRKITYTCDICGKKFTEKSDVKKHIDSKHNGDTRAHTTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481669;
- 90% Identity
- iTF_01481669;
- 80% Identity
- iTF_01481669;