Basic Information

Insect: Trichogramma brassicae
Gene Symbol: -
Assembly: GCA_902806795.1
Location: CADCXV010000950.1:237358-240416[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.2e-06 5.3e-05 23.4 1.4 1 23 30 53 30 53 0.93

2 19 1.3e-06 5.7e-05 23.3 2.1 1 23 58 81 58 81 0.97

3 19 1.7e-05 0.00073 19.8 0.2 1 23 86 109 86 109 0.92

4 19 6.5e-07 2.8e-05 24.2 0.8 1 23 114 137 114 137 0.97

5 19 6.1e-07 2.6e-05 24.3 0.6 1 23 142 165 142 165 0.97

6 19 8.5e-06 0.00036 20.7 0.9 1 23 170 193 170 193 0.91

7 19 0.021 0.91 10.0 0.0 1 23 198 221 198 221 0.90

8 19 6.3e-06 0.00027 21.1 0.7 2 23 228 250 228 250 0.97

9 19 3.2e-05 0.0014 18.9 1.5 1 23 255 278 255 278 0.94

10 19 5.6e-05 0.0024 18.2 0.6 1 23 283 306 283 306 0.94

11 19 2.4e-07 1e-05 25.6 0.5 1 23 312 335 312 335 0.96

12 19 2e-05 0.00086 19.6 0.2 1 23 340 363 340 363 0.93

13 19 0.02 0.84 10.1 3.7 1 23 368 391 368 391 0.94

14 19 2.5e-06 0.00011 22.4 1.2 2 23 397 419 396 419 0.94

15 19 1.7e-05 0.0007 19.8 1.2 1 23 424 447 424 447 0.94

16 19 2.5e-05 0.0011 19.2 2.3 2 23 453 475 450 475 0.89

17 19 0.14 5.9 7.5 4.7 1 23 482 505 482 505 0.95

18 19 2.2e-05 0.00093 19.4 3.8 1 23 510 533 510 533 0.93

19 19 1.5e-06 6.2e-05 23.1 0.3 1 23 538 561 538 561 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.2e-06	5.3e-05	23.4	1.4	1	23	30	53	30	53	0.93
2	19	1.3e-06	5.7e-05	23.3	2.1	1	23	58	81	58	81	0.97
3	19	1.7e-05	0.00073	19.8	0.2	1	23	86	109	86	109	0.92
4	19	6.5e-07	2.8e-05	24.2	0.8	1	23	114	137	114	137	0.97
5	19	6.1e-07	2.6e-05	24.3	0.6	1	23	142	165	142	165	0.97
6	19	8.5e-06	0.00036	20.7	0.9	1	23	170	193	170	193	0.91
7	19	0.021	0.91	10.0	0.0	1	23	198	221	198	221	0.90
8	19	6.3e-06	0.00027	21.1	0.7	2	23	228	250	228	250	0.97
9	19	3.2e-05	0.0014	18.9	1.5	1	23	255	278	255	278	0.94
10	19	5.6e-05	0.0024	18.2	0.6	1	23	283	306	283	306	0.94
11	19	2.4e-07	1e-05	25.6	0.5	1	23	312	335	312	335	0.96
12	19	2e-05	0.00086	19.6	0.2	1	23	340	363	340	363	0.93
13	19	0.02	0.84	10.1	3.7	1	23	368	391	368	391	0.94
14	19	2.5e-06	0.00011	22.4	1.2	2	23	397	419	396	419	0.94
15	19	1.7e-05	0.0007	19.8	1.2	1	23	424	447	424	447	0.94
16	19	2.5e-05	0.0011	19.2	2.3	2	23	453	475	450	475	0.89
17	19	0.14	5.9	7.5	4.7	1	23	482	505	482	505	0.95
18	19	2.2e-05	0.00093	19.4	3.8	1	23	510	533	510	533	0.93
19	19	1.5e-06	6.2e-05	23.1	0.3	1	23	538	561	538	561	0.97

Sequence Information

Coding Sequence: ATGTTTGACGAAAAACCCGATCTCAAAAACGTCCAACTTTTACCATTTCCACGAGAAAATTCCGCCAAGCACAATGGTATTATCAAGCATACGTGCGACgtgtgcggaaagaaattctcgTCGAAGACCAATCTCAAAGCTCACGTGGTTTCGATGCATGACGGTATCAAATACCGGTGTAATGTTTGCGGAAAGATGTGCACTAAAAAAGACAATCTTCGAATGCACATGGATTCGGCGCACAATGGTATAAAATACGCATGCGATACATGCGGAAAGACATTCCGGTACAGAGGCGGTCTCAAAGAACACATCGACGCGAAGCACAAGGATTTCAGCTACCCGTGCAACATTTGCGGGAGAACGTTCGCACGAAAGCATTATCTGAAGATTCACGTCGATACGGTGCACAGAGGCGTCAGCCACGTATGCGACATCTGCGGAAAGTCGTTCGCGCAAAGAGGCAAACTCAAGATTCACATCGAGACGAGGCACGGCAGCGTCAGACACGCCTGCGAAGTTTGCgggaaaaatttcacgaggaaGACCAGTCTGAAAACTCACGCGAATGCGGCACACAACGGCGTCAGTTACCCATGCAATATCTGCGGAAAGCTTTACTTGCTAAAGGGCAATCTACGAGCTCACGTCGACGAGGTGCACAGTATCGGCGTCGCGCCAACCTGCGACATCTGCGGAAAGACATTCGTGAACAAGGCTCACGTCGTCAGGCACGCGCGCTCGTTGCACCAAAACATCAGACACGCGTGCCACGTGTGCGGCAAGAAATTTTCGCAGGTGGGCACACTGAGGAATCACGTGGAGTCCGTGCATCTGGGTGTCGAGCACGTCTGCGAcatttgcggaaagaaatttcaaGCCAAGAGCAGTCTCAGAGTTCACGTCGATAAAGCTCACGTGAACGGCGCCAAGTTCACGTGCGACGAGTGCGGAAAGTCGTTCACGACGAAATCTTACGTGAAGACCCACATCGAGGTGGCGCACATCGGCGTCAAATATCCGTGCGACGTGTGCAAGAGGATATTCTCGAGTAAAAAGTCTCTGAAGATCCACATCGATGCTGCCCACAATGGCATGATGCATCCGTGCGATGCATGCGGAAAGGTATTTTTCTACCGATGCACTCTGCTGGCTCACACCAAGTACCGTCACAGCGGAGTCGCGCAAACGTGCGACAcctgcggaaagaaattctcgACCAAGAGCACTCTGAGAAATCACGTCGACTCGATTCACAACAAGATCAAGCACCCGTGCGACGCGTGCGGCAAGAAGTTCTCGGACAAGGGCAATCTCCGAGTTCACGTGCACTCGGTGCACAGCGGTTACAGGTGCACCTGCGACATTTGCCGGCAGACCTTCACGCAGAAGAGAAGCCTCAAGAACCACATAGCCGTGGTGCACggcgatgcgcgcgcgccgcatcCGTGCCGTACGTGCGGAAAGACGTTCCTCTACACGAGCAGTCTGGGACACCACAGGAACAGCAGACACAGGGGCGTCACGCACAAGTGCGATACTTGCAAAAAGACGTATCGAAGGAAGGATTATCTCCGTAAGCACATCGACGGGATGCACAACGGTGTCAGGTACGAGTGcaatatttgcggaaagaagATCTCGGATAGGAATAATCTCAGAAATCACATCAATAGTGTGCATAGATAG
Protein Sequence: MFDEKPDLKNVQLLPFPRENSAKHNGIIKHTCDVCGKKFSSKTNLKAHVVSMHDGIKYRCNVCGKMCTKKDNLRMHMDSAHNGIKYACDTCGKTFRYRGGLKEHIDAKHKDFSYPCNICGRTFARKHYLKIHVDTVHRGVSHVCDICGKSFAQRGKLKIHIETRHGSVRHACEVCGKNFTRKTSLKTHANAAHNGVSYPCNICGKLYLLKGNLRAHVDEVHSIGVAPTCDICGKTFVNKAHVVRHARSLHQNIRHACHVCGKKFSQVGTLRNHVESVHLGVEHVCDICGKKFQAKSSLRVHVDKAHVNGAKFTCDECGKSFTTKSYVKTHIEVAHIGVKYPCDVCKRIFSSKKSLKIHIDAAHNGMMHPCDACGKVFFYRCTLLAHTKYRHSGVAQTCDTCGKKFSTKSTLRNHVDSIHNKIKHPCDACGKKFSDKGNLRVHVHSVHSGYRCTCDICRQTFTQKRSLKNHIAVVHGDARAPHPCRTCGKTFLYTSSLGHHRNSRHRGVTHKCDTCKKTYRRKDYLRKHIDGMHNGVRYECNICGKKISDRNNLRNHINSVHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01481671;
90% Identity: iTF_01481671;
80% Identity: iTF_01481671;