Basic Information

Insect: Trichogramma brassicae
Gene Symbol: -
Assembly: GCA_902806795.1
Location: CADCXV010000950.1:237358-240416[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.2e-06 0.0069 16.3 0.7 17 43 30 53 16 54 0.90

2 16 0.0029 3.2 7.8 3.2 16 44 57 82 55 82 0.93

3 16 0.011 13 5.8 0.2 18 44 87 110 84 110 0.89

4 16 0.002 2.3 8.2 1.3 13 43 110 137 106 138 0.75

5 16 0.054 61 3.7 1.3 18 43 143 165 132 166 0.82

6 16 0.0069 7.7 6.5 1.8 18 43 171 193 161 194 0.79

7 16 0.042 47 4.0 0.4 19 43 200 221 197 222 0.81

8 16 0.028 31 4.6 1.6 7 29 217 239 212 255 0.73

9 16 0.0093 10 6.1 2.0 17 43 255 278 240 279 0.82

10 16 0.0041 4.6 7.3 0.2 18 43 284 306 282 307 0.89

11 16 0.15 1.6e+02 2.3 0.7 6 36 301 328 300 336 0.72

12 16 0.075 84 3.2 0.4 19 43 342 363 335 364 0.86

13 16 2.5 2.8e+03 -1.7 0.3 19 29 370 380 367 392 0.75

14 16 0.24 2.7e+02 1.6 4.8 19 44 484 506 482 506 0.91

15 16 0.14 1.6e+02 2.3 2.9 18 43 511 533 509 534 0.84

16 16 1.6e-06 0.0018 18.1 2.0 18 44 539 562 536 562 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.2e-06	0.0069	16.3	0.7	17	43	30	53	16	54	0.90
2	16	0.0029	3.2	7.8	3.2	16	44	57	82	55	82	0.93
3	16	0.011	13	5.8	0.2	18	44	87	110	84	110	0.89
4	16	0.002	2.3	8.2	1.3	13	43	110	137	106	138	0.75
5	16	0.054	61	3.7	1.3	18	43	143	165	132	166	0.82
6	16	0.0069	7.7	6.5	1.8	18	43	171	193	161	194	0.79
7	16	0.042	47	4.0	0.4	19	43	200	221	197	222	0.81
8	16	0.028	31	4.6	1.6	7	29	217	239	212	255	0.73
9	16	0.0093	10	6.1	2.0	17	43	255	278	240	279	0.82
10	16	0.0041	4.6	7.3	0.2	18	43	284	306	282	307	0.89
11	16	0.15	1.6e+02	2.3	0.7	6	36	301	328	300	336	0.72
12	16	0.075	84	3.2	0.4	19	43	342	363	335	364	0.86
13	16	2.5	2.8e+03	-1.7	0.3	19	29	370	380	367	392	0.75
14	16	0.24	2.7e+02	1.6	4.8	19	44	484	506	482	506	0.91
15	16	0.14	1.6e+02	2.3	2.9	18	43	511	533	509	534	0.84
16	16	1.6e-06	0.0018	18.1	2.0	18	44	539	562	536	562	0.94

Sequence Information

Coding Sequence: ATGTTTGACGAAAAACCCGATCTCAAAAACGTCCAACTTTTACCATTTCCACGAGAAAATTCCGCCAAGCACAATGGTATTATCAAGCATACGTGCGACgtgtgcggaaagaaattctcgTCGAAGACCAATCTCAAAGCTCACGTGGTTTCGATGCATGACGGTATCAAATACCGGTGTAATGTTTGCGGAAAGATGTGCACTAAAAAAGACAATCTTCGAATGCACATGGATTCGGCGCACAATGGTATAAAATACGCATGCGATACATGCGGAAAGACATTCCGGTACAGAGGCGGTCTCAAAGAACACATCGACGCGAAGCACAAGGATTTCAGCTACCCGTGCAACATTTGCGGGAGAACGTTCGCACGAAAGCATTATCTGAAGATTCACGTCGATACGGTGCACAGAGGCGTCAGCCACGTATGCGACATCTGCGGAAAGTCGTTCGCGCAAAGAGGCAAACTCAAGATTCACATCGAGACGAGGCACGGCAGCGTCAGACACGCCTGCGAAGTTTGCgggaaaaatttcacgaggaaGACCAGTCTGAAAACTCACGCGAATGCGGCACACAACGGCGTCAGTTACCCATGCAATATCTGCGGAAAGCTTTACTTGCTAAAGGGCAATCTACGAGCTCACGTCGACGAGGTGCACAGTATCGGCGTCGCGCCAACCTGCGACATCTGCGGAAAGACATTCGTGAACAAGGCTCACGTCGTCAGGCACGCGCGCTCGTTGCACCAAAACATCAGACACGCGTGCCACGTGTGCGGCAAGAAATTTTCGCAGGTGGGCACACTGAGGAATCACGTGGAGTCCGTGCATCTGGGTGTCGAGCACGTCTGCGAcatttgcggaaagaaatttcaaGCCAAGAGCAGTCTCAGAGTTCACGTCGATAAAGCTCACGTGAACGGCGCCAAGTTCACGTGCGACGAGTGCGGAAAGTCGTTCACGACGAAATCTTACGTGAAGACCCACATCGAGGTGGCGCACATCGGCGTCAAATATCCGTGCGACGTGTGCAAGAGGATATTCTCGAGTAAAAAGTCTCTGAAGATCCACATCGATGCTGCCCACAATGGCATGATGCATCCGTGCGATGCATGCGGAAAGGTATTTTTCTACCGATGCACTCTGCTGGCTCACACCAAGTACCGTCACAGCGGAGTCGCGCAAACGTGCGACAcctgcggaaagaaattctcgACCAAGAGCACTCTGAGAAATCACGTCGACTCGATTCACAACAAGATCAAGCACCCGTGCGACGCGTGCGGCAAGAAGTTCTCGGACAAGGGCAATCTCCGAGTTCACGTGCACTCGGTGCACAGCGGTTACAGGTGCACCTGCGACATTTGCCGGCAGACCTTCACGCAGAAGAGAAGCCTCAAGAACCACATAGCCGTGGTGCACggcgatgcgcgcgcgccgcatcCGTGCCGTACGTGCGGAAAGACGTTCCTCTACACGAGCAGTCTGGGACACCACAGGAACAGCAGACACAGGGGCGTCACGCACAAGTGCGATACTTGCAAAAAGACGTATCGAAGGAAGGATTATCTCCGTAAGCACATCGACGGGATGCACAACGGTGTCAGGTACGAGTGcaatatttgcggaaagaagATCTCGGATAGGAATAATCTCAGAAATCACATCAATAGTGTGCATAGATAG
Protein Sequence: MFDEKPDLKNVQLLPFPRENSAKHNGIIKHTCDVCGKKFSSKTNLKAHVVSMHDGIKYRCNVCGKMCTKKDNLRMHMDSAHNGIKYACDTCGKTFRYRGGLKEHIDAKHKDFSYPCNICGRTFARKHYLKIHVDTVHRGVSHVCDICGKSFAQRGKLKIHIETRHGSVRHACEVCGKNFTRKTSLKTHANAAHNGVSYPCNICGKLYLLKGNLRAHVDEVHSIGVAPTCDICGKTFVNKAHVVRHARSLHQNIRHACHVCGKKFSQVGTLRNHVESVHLGVEHVCDICGKKFQAKSSLRVHVDKAHVNGAKFTCDECGKSFTTKSYVKTHIEVAHIGVKYPCDVCKRIFSSKKSLKIHIDAAHNGMMHPCDACGKVFFYRCTLLAHTKYRHSGVAQTCDTCGKKFSTKSTLRNHVDSIHNKIKHPCDACGKKFSDKGNLRVHVHSVHSGYRCTCDICRQTFTQKRSLKNHIAVVHGDARAPHPCRTCGKTFLYTSSLGHHRNSRHRGVTHKCDTCKKTYRRKDYLRKHIDGMHNGVRYECNICGKKISDRNNLRNHINSVHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01481694;
90% Identity: iTF_01481694;
80% Identity: iTF_01481694;