Tbra003863.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000699.1:435881-438259[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-06 0.0037 16.9 0.0 7 38 166 197 165 200 0.93 2 2 0.00016 0.22 11.2 0.0 4 43 641 680 639 682 0.92
Sequence Information
- Coding Sequence
- ATGGCGGAAGACAAGAGGCGGGGGCGGCGGCGCTCGAGGCCGCCCATCTTCACCGAGAAGGAGGAGAGGCAGCTGGTGCACTACATGAACGCGCGCTCGGCCATGGAGAACGGCATAGGTCGCGCGAGGATGCGCCGGATCGCCTATCAGTACGCCGTCGCGAAGAGACTGAGGTACCCGGCGAGCTGGGACGAGGCCCAGCAGGCCGGTCTCACCTGGCTGCGCAGCTTCACCGTCAAGAATCGCCAGAAGCTGACGATCAAGCCGGAAGAGCTGCTGGCGGCGCGCGATAAAGAAGGCGACTCGTCcttcgacgaggacgaggatcTCGAGGACTTCGATCCGTTCGAGGATGCAGTTGTGATACACGAGGAGGacgaagaggaggaggaagagaacGCGGACGAacaagaagatgaagaagaaaaagagccaCCGGAGAAGAAGAGGCGCGTAGGCCGAAGGAAAAAGGAGGTGGATAAGAGCGTCGTGCTGCAGGCCATCGAGGACGTGACGAGTAAGAGGCTGAACCTGCGCGAGGCCTCGCGCCTCTACGACGTCGCGCTCACCACGCTCCATCTGCATCTGCGAATCTATCGAAGCGTGGGTGGCTCGGCCGAGGCGTACCTCAGCCAGACGATCGGCCGTAGACGCGGTTTCGCCAGTCGCGACGAGTCGGCCATCGTCGAGCACGTGAATCGCTGCGCCGACGCGGAGGGCTGCCGCCTCGGCAGAAAACGCGCCAGACGCCTGGTCTACGAGTTCGTCCGCGGCCAGGGCATGAAGTATCCCAAGGGCTGGGACGAGCGAGAAATCGCGTCGACCAGCTGGATGCTGGGTTTCATCGTTAAGCACGGCCAAGAGTTGAAGCTGGACGAGAAGGCGTTGAAAATTGGTTCCCTGACTTCGAAAAATAGCGTGGAAGGTGTGGAAGAAGATGCGCTCGACGACGTCGAGGAAGATTCCGAGAGCTGCTCGGTCAGCAACGAATACGTCGACGGCATAAACGATAGTTATTTATTGAACGAAGACGATGCCTCGGAATCTTTTCCCTTCGATTGTCAATACAACGAGGAAAAAGGAGTCGCGATCGAGGAGGTCGTGATCGCGCCGAGTAAAGCCAGCGACGACGAGGTAATTATCGAGAGCTACGATGTGATGGATGAGGAACCAAAGGCAGAGGAAAAAGAATACGACACTAAAGAAGAGGAGAGGGTGGCCGACGAAGAAGAGGAAATAGCTCGATACGATCGCGAAGAAGAAGCGACGGACGAAGTCGAGAACGTGAAAATGGTACGAACTTTTTATCACTTTCCCGACATGGTTTACGAGACTTTCGAGCCGGTAGGCGACGTTAACGATAATAATTGTGATATCGTTGAGGATGAATGCTCGGAGTACAGTGATGAATGTGTCGACGTTACCGAAGATCATTTACTCGATGACAGTATTAACGAcaattttgttgaaattacGAACGAGCACCAAGCCAAAAAACAGGAGATCAACGCCAATTACGTAGTTGAGCTCAACCATAACGATATAGAAATTATTAATGTCTCGAGCGACGCTGCCTCCAGTCCCGAGCCTgtctcgaaaaaaattttcaccgaCGAGGAAGAGTCGCAGCTCGTAGATTACATCAATTCGGCCGCCtcgagcgagctgctgctcacGCTCAAGCAAGCGAAAAAACTGACCTACGAGTACGCCACGAAGCAGATACGCAAGTACAGCCGGGTGTACGACGCCTGGCGCGCCTTCGACACCTCGTGGATGAGGCAGTTCTACGCGAGACATCGCGCGGACTTTGCGACGACGCTTGATCCTCGTGAGTTCGAGGCggacggcgacgacgagaaAGCCAACTGTTACAAGGGCAAAAAGCTCAAGCCCGGCAAGTACGTGTACGACGTGGCGAATCTCCACAAGGCCCTGGACGGCATCGTGGCGGGCGACTGGAGCGTCAAGGAGGGCTCGGATCTGTTCAACATAGCGCCCGCGACGCTGCAGCATCACAAGCGCCTcaccgagcagcagcagcagagtaactcgtcgtcgtgctgcagcagcagcagcagcagcagcagcagcagcaaagccgAGACGAATTACGAGCTGCACAGGATCTGGAGCGACGAGCAGGAGCGCGACCTCGTGACGCACCTGAACAAGATGGCACGCGCCGAGGGCGGCCTGACCAGGAAGCGATACCGCAAGGAGATCTACGCTTACGCGAAGAACACGCCAGGGACGCGGTATCCGGGCGCTTGGGACATGCTCGACATGGCGAGCTCGTACTGGACCCAGGGTTTCATGAAGAAGCACAAGGACAGACTGTGTCTCAGTTGGCCGGTCAAAGTGATAAAGAGTCATTga
- Protein Sequence
- MAEDKRRGRRRSRPPIFTEKEERQLVHYMNARSAMENGIGRARMRRIAYQYAVAKRLRYPASWDEAQQAGLTWLRSFTVKNRQKLTIKPEELLAARDKEGDSSFDEDEDLEDFDPFEDAVVIHEEDEEEEEENADEQEDEEEKEPPEKKRRVGRRKKEVDKSVVLQAIEDVTSKRLNLREASRLYDVALTTLHLHLRIYRSVGGSAEAYLSQTIGRRRGFASRDESAIVEHVNRCADAEGCRLGRKRARRLVYEFVRGQGMKYPKGWDEREIASTSWMLGFIVKHGQELKLDEKALKIGSLTSKNSVEGVEEDALDDVEEDSESCSVSNEYVDGINDSYLLNEDDASESFPFDCQYNEEKGVAIEEVVIAPSKASDDEVIIESYDVMDEEPKAEEKEYDTKEEERVADEEEEIARYDREEEATDEVENVKMVRTFYHFPDMVYETFEPVGDVNDNNCDIVEDECSEYSDECVDVTEDHLLDDSINDNFVEITNEHQAKKQEINANYVVELNHNDIEIINVSSDAASSPEPVSKKIFTDEEESQLVDYINSAASSELLLTLKQAKKLTYEYATKQIRKYSRVYDAWRAFDTSWMRQFYARHRADFATTLDPREFEADGDDEKANCYKGKKLKPGKYVYDVANLHKALDGIVAGDWSVKEGSDLFNIAPATLQHHKRLTEQQQQSNSSSCCSSSSSSSSSSKAETNYELHRIWSDEQERDLVTHLNKMARAEGGLTRKRYRKEIYAYAKNTPGTRYPGAWDMLDMASSYWTQGFMKKHKDRLCLSWPVKVIKSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482317;
- 90% Identity
- iTF_01483757;
- 80% Identity
- -