Tmad008477.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- nfxl1
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000011.1:7506008-7516517[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2 1.7e+04 -5.0 1.9 15 19 160 164 160 164 0.85 2 18 0.13 1.1e+03 -0.3 0.4 4 10 195 201 194 201 0.95 3 18 3e-08 0.00026 20.9 17.0 1 19 209 226 209 226 0.99 4 18 3.4e-07 0.003 17.5 15.8 1 19 262 280 252 280 0.87 5 18 1.3 1.2e+04 -3.5 1.0 6 10 305 309 304 309 0.88 6 18 2.7e-09 2.4e-05 24.2 9.1 1 19 315 333 315 333 0.99 7 18 0.42 3.6e+03 -1.9 1.5 5 10 357 362 357 362 0.94 8 18 4.1e-05 0.36 10.9 9.5 1 16 368 383 368 388 0.86 9 18 0.00014 1.2 9.2 17.4 1 18 414 431 414 432 0.94 10 18 2.5e-10 2.2e-06 27.5 10.8 1 18 441 458 441 459 0.97 11 18 0.68 6e+03 -2.6 1.1 5 10 487 492 487 492 0.94 12 18 0.00042 3.7 7.6 8.0 9 19 507 517 505 517 0.91 13 18 0.028 2.4e+02 1.8 4.5 4 12 529 537 527 537 0.86 14 18 0.91 7.9e+03 -3.0 1.6 14 18 565 569 565 570 0.85 15 18 0.00081 7.1 6.7 4.5 1 11 604 614 596 615 0.83 16 18 0.4 3.5e+03 -1.9 1.0 5 10 631 636 631 636 0.92 17 18 1.5e-05 0.13 12.3 21.3 4 19 646 661 644 661 0.94 18 18 3.5e-06 0.03 14.3 11.8 1 16 703 717 703 723 0.92
Sequence Information
- Coding Sequence
- ATGGCTGCTCGCAAAAAAGAAACCAACGTTTGGAAGAAAAATGTTAATCATAACAGAAGTGGTAATTCGGTAAATTCCCCGACACCTGCAGAATTGAAATTTAAAGAAGCCCATGGAAAACTTCAAGCAGCAGTGCAGAAATATGTTCAAGACTATGAATCGTCTTCCTCGGAAGATGAATTAGAATCTGATAACATAATAGGCGAAATTATCAAAAATTATACTAAAACAGGAGGGAAAGATGAGTGTTTAGGGAGAACTAAAATCTTCCTTCACGATTCATTTCTATCAGGGACTGCCACATGTCTAATTTGCATTTCTAGGATAAAAAGGGATTCTTCAATTTGGAACTGCAACGCTTGCTACTGTGTCTTCCACCTAACTTGTATACAAAGATGGTCCAAAGACAGTATTTTTCAACAAAAACAAATCCAGGAAGCCCCAATTCAAGTCCAGAAAGTGACTTTAACGTGGGGTTGCCCCAAATGTCGCCACAATTACCAACTAGACGATATACCAGACAAATATTACTGTTTCTGTGGCAAAACCACAAACCCTGGACTCCAACCATTTCTAGTACCACATTCGTGTGGAGAGATTTGTGGTAAAGATTTAGTGCCACTTTGTGGCCACAAATGTTTGTTATTGTGTCATCCAGGCCCTTGTCCACCCTGCCCTGTAACAATTAGTGTTACATGTTACTGTGGTAAAAAACAACCGGTTACTAGACGCTGCAGTGATAAGAAATGGTCTTGTGGGGGCCCTTGTGGAGAGTTATTGACCTGTCAGAAACACAGTTGTTCTGATGTTTGTCACCCTGGGGACTGTAAACCATGTCCGAAGAAAAGTCTCCAGAAATGTTTGTGTAAAACTAGTCAGAAGTTGCGTGATTGTGCTACCCCCATATGGCAGTGTGATAAGGTGTGTAATAAACCACTCCAGTGTGGTAATCATTCTTGCGCAGTTATTTGCCATGATGGCATTTGTGATTCGTGTCCTTTGACGAAGCAAAGGACATGTCCTTGTGGCAAAAGCAAATATCAATTGCCTTGTATTGAAGAAACACCCACTTGTCAAGACACTTGCGATAAATTATTAACTTGCGGTCTTCATAGGTGCAATCAGCGGTGTCACAAAGACGCTTGCGTCGAAAAGTCATGCAAATGTGGCCTACATTTAAAAGAAGTGCATTGCTCTAAACCCTACTTCTGCGAAACAAAATGCAAACGAATGAGGGATTGCAATAAACACCCTTGCAACAAAAAGTGTTGTGATGGCAGTTGTCCACCATGTGAAAAACCCTGTGGTCGCACCCTCAATTGTGGCAATCACAAGTGCAATTCAGTGTGTCACAGAGGTCTGTGTTACCCTTGCAACCAAACCGATGTTGTGACTTGTCGTTGTGGTCAAACCAAATTAACTGTGCCGTGTGGACGAAAACATAAAACTAAACCACCAAAATGTAGCAAATTGTGTTTAATCCCTCCAGACTGTCACCACGAATCGAGGGAACCACACAAGTGCCACTTTGGGGATTGTCCACCGTGTAAACAAACCTGCAATAAATCTCGTCTCAAGTGCGCTCACCTTTGCAGTGCCCCTTGTCATTCTGCCGTTTTTGTGAAAATCGAAACTAAGAAGGCGTCGATGCCTTGGGAACAAATGAAACCACAATTGGAACGCAAGGCTTTGGATTGTCCCAATTGTGAAGTCCCGGTGTCAGTCACGTGTGAGCACGAGACCTGCGACTGGCCTTGCTACCAAGCAGCCCCCTCGAGCTGTCTCCGACCATGTGGACGTCTCCTAAACTGCGAAAACCACACTTGTGCCCTTCCATGTCACTTGGTGGAAGCCCCCCCTGACAAAATCAAGGCCGGCCAAAATTGTGAAAAATGCGAAGCCCCGTGCTCCAAACCCCGACCTGAGGGTTGCCCCCACGAATGCCCTAAACCATGCCACCCCGGCCCTTGCCCCCCTTGCAAACAAATGCTTCGTATAAGGTGCCATTGTGGCCTTAATCAGCCTTACGTGTCATGCAACGATTGGTTGAATCCAAAGAGAGAAGAAATCCAAAGTTGTGGTAATCAGTGTCCAAGGAGTTTCGATTGTGGTCACAGATGTCGCGCAAATTGCCATTCGGGCCCCTGCCCAAATCCGGAACTTTGTCGCAGGAAAGTCAAACTGACTTGTAAATGTAAAAGGTTGAAGAAGGAGTTTTCCTGCGAGATGGTTCGTAATAATTCGGCGAAAGTTGAGTGTGATGAGGGTTGTCTCCGGAAGAAAGAGGAGGAAATTAAGCAGCAGGAAATGATCAATGAGCAAAAACGGAAAGAGGAGGAGTTGAAGAATGAGAGGGAGTTGGCCAAGTATAAGAAGATGTTTGAGAGTAAGAAGAGGACGAGGGAGCGAAGGTTGTACGAAGAAGAGGAAGAAGTTGGGTTTATTAAGAGACATTTGGTTTTGATAACCACAATCACGGGAGTTGTGGTATCTACAGTAGTGTTTTTTCTACTTAGATGA
- Protein Sequence
- MAARKKETNVWKKNVNHNRSGNSVNSPTPAELKFKEAHGKLQAAVQKYVQDYESSSSEDELESDNIIGEIIKNYTKTGGKDECLGRTKIFLHDSFLSGTATCLICISRIKRDSSIWNCNACYCVFHLTCIQRWSKDSIFQQKQIQEAPIQVQKVTLTWGCPKCRHNYQLDDIPDKYYCFCGKTTNPGLQPFLVPHSCGEICGKDLVPLCGHKCLLLCHPGPCPPCPVTISVTCYCGKKQPVTRRCSDKKWSCGGPCGELLTCQKHSCSDVCHPGDCKPCPKKSLQKCLCKTSQKLRDCATPIWQCDKVCNKPLQCGNHSCAVICHDGICDSCPLTKQRTCPCGKSKYQLPCIEETPTCQDTCDKLLTCGLHRCNQRCHKDACVEKSCKCGLHLKEVHCSKPYFCETKCKRMRDCNKHPCNKKCCDGSCPPCEKPCGRTLNCGNHKCNSVCHRGLCYPCNQTDVVTCRCGQTKLTVPCGRKHKTKPPKCSKLCLIPPDCHHESREPHKCHFGDCPPCKQTCNKSRLKCAHLCSAPCHSAVFVKIETKKASMPWEQMKPQLERKALDCPNCEVPVSVTCEHETCDWPCYQAAPSSCLRPCGRLLNCENHTCALPCHLVEAPPDKIKAGQNCEKCEAPCSKPRPEGCPHECPKPCHPGPCPPCKQMLRIRCHCGLNQPYVSCNDWLNPKREEIQSCGNQCPRSFDCGHRCRANCHSGPCPNPELCRRKVKLTCKCKRLKKEFSCEMVRNNSAKVECDEGCLRKKEEEIKQQEMINEQKRKEEELKNERELAKYKKMFESKKRTRERRLYEEEEEVGFIKRHLVLITTITGVVVSTVVFFLLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01480537;
- 90% Identity
- -
- 80% Identity
- -