Tcas000439.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tribolium castaneum
Gene Symbol
nfxl1
Assembly
GCA_000002335.3
Location
NC:17055293-17072883[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2 1.3e+04 -5.0 1.9 15 19 161 165 161 165 0.85
2 18 0.35 2.2e+03 -1.7 0.2 4 10 196 202 196 202 0.93
3 18 2.8e-08 0.00018 21.0 16.6 1 19 210 227 210 227 0.99
4 18 2.1e-07 0.0013 18.2 16.4 1 19 263 281 253 281 0.87
5 18 1.1 6.7e+03 -3.2 0.8 6 10 306 310 305 310 0.88
6 18 7.9e-09 5e-05 22.7 10.4 1 19 316 334 316 334 0.99
7 18 0.42 2.7e+03 -2.0 1.5 5 10 358 363 358 363 0.94
8 18 9.3e-06 0.058 12.9 8.4 1 18 369 386 369 387 0.96
9 18 1 6.6e+03 -3.2 0.2 1 4 396 399 396 400 0.87
10 18 0.00014 0.9 9.1 17.4 1 18 421 438 421 439 0.94
11 18 2.6e-10 1.6e-06 27.5 10.8 1 18 448 465 448 466 0.97
12 18 0.69 4.4e+03 -2.6 1.1 5 10 494 499 494 499 0.94
13 18 0.00043 2.7 7.6 8.0 9 19 514 524 512 524 0.91
14 18 0.28 1.8e+03 -1.4 5.0 4 12 536 544 534 544 0.88
15 18 0.0015 9.6 5.9 6.0 1 11 613 623 607 624 0.80
16 18 1.1 7.1e+03 -3.3 0.7 6 10 641 645 640 645 0.90
17 18 4.5e-06 0.028 13.9 20.0 3 19 654 670 653 670 0.94
18 18 3.5e-06 0.022 14.3 11.8 1 16 713 727 713 733 0.92

Sequence Information

Coding Sequence
ATGGCTGCACGTAAAAAAGAAAGCAACGTTTGGAAGAAAAATACTAATCATAACCGGGGTGGTAACACTTTAGTGAATTCCCCGACACCTGCAGAATTGAAATTTAAGGAAGCACATGGAAAACTTCAAGCGGCAGTGCAGAAATATGTGCAAGATTATGAATCGTCTTCCTCTGAAGACGAGTTAGAATCTGACAATATAATAGGCGAAATTATTAAAAATTACACTAAAACAGGAGCGAAAGATGAGTACTTAGGGAGAACTAAAACCTTCCTTCAGGATTCGTTTTTATCAGGGACTGTCACGTGTCTGATTTGCATATCCAGAATAAAAAGGGACTCTTCAATATGGAATTGCAATGAATGCTACTGTGTCTTCCACCTAACTTGTATTCAAAGATGGTCCAAGGACAGTATTTTTCAACAAAAACAAATACAAGAAGGTCCAATTCAAGTTCAGAAAGTTACTTTAACGTGGGGTTGCCCCAAATGTAGACACAATTACCAACTGGAAGATATACCAGACAAGTATTACTGTTTTTGTGGTAAAACCACCAATCCTGAGCTTCAGCCGTTCTTGGTACCACATTCTTGTGGCGACATTTGTGGAAAGGATTTGGTGCCACTTTGTGGTCACAGATGCTTGTTATTGTGTCATCCAGGTCCTTGTCCACCTTGCCCTGTAACAGTTAGTGTAACGTGTTACTGTGGCAAAAAACAACCAGCTACACGAAGATGCAGTGACAAGAAGTGGTCCTGTGGAGGCCCCTGTGGCAAGCTTTTGACTTGTCAGAAACACAGTTGTTCTGAGGTTTGTCATCCTGGTGATTGTAAGCCATGCCCAAAGAAAAGTCTCCAGAAATGTTTGTGCAAAACTAGTCAGAAGTTGCGTGACTGTGCTACGCCCATATGGCAGTGTGATAGGGTGTGTAATAAGCCGCTTCAGTGTGGAAATCATTCTTGCTCAATTGTTTGCCATGAAGGCATTTGTGATTCTTGCCCTTTGACTAAACAAAGAACTTGTCCTTGTGGCAAGAGCAAATATCAGTTGCCTTGTACTGAAGAAACACCTACCTGTCAAGATACTTGTGATAAATTATTAACCTGCAGTCTTCATAGATGTAATCAACGGTGTCACAAAGACGCTTGCGGTGCGTGCCTTGAAATTGTTGAAAAATCGTGCAAATGTGGCCTACATTCAAAAGAAGTTCATTGTTCTAAACCATATTTCTGCGAAACCAAATGTAAACGAATGCGGGATTGCAACAAACACCCGTGCAATAAAAAGTGTTGTGATGGCAGTTGTCCTCCATGTGAAAAACCCTGTGGCCGTACACTCAACTGTGGCAATCACAAATGCAATTCAGTTTGTCACAGAGGTCTCTGTTACCCTTGCAACCAAACCGATGTTGTGACCTGTCGTTGTGGTCAAACCAAATTGACTGTACCTTGTGGAAGAAAGCATAAAACTAGACCACCAAAGTGTAGCAAATTGTGTTTAATTCCTCCTGACTGCCACCATGAAAAGAGGGAACCACACAAATGCCACTTTGGTGATTGTCCACCCTGTAAACAAATCTGCAATAAACCCCGATCCAAGTGCCCTCATTTATGCAGTGCTTCCTGTCATTCTGCCGTCGTAGTGAAAATTGAAAGTAAGAAGGCATCAATGCCGTGGGAACAAACCAAACCACAACTGGAACGCAAGGCTTTGGCTTGTCCAGACTGTGAAGTCCCGGTTTCAGTCACTTGTTTAGGTGAGCATGAAACCTGCGACTGGCCTTGCTACAAAGCCGTTCCTTCAAGTTGTCATCGTCCATGTGGACGCCAACTTACCTGTGAAAACCACACTTGCACCCTTCCATGCCACGTGGTTGACAACTCCCCTAACAAGATCAGTGCCGGCCAGAATTGCGAAATATGCGAAAATCCGTGCTCCAAACCCCGGCCTGAAGGTTGCCAACACGACTGCCCTAAACCATGTCACCCCGGCCCTTGTCCGCCGTGCAAACAAATGCTCCGTATCAGATGCCACTGCGGACTTAACCAACCCTACGTGTCTTGCAACGATTGGTTGAGTCCCGAAAAACGCGAAGAAATCCAAAGTTGCGGCAATCAATGTCCGAAGAATTTCGATTGTGGGCACAGATGTCGCGCAAATTGCCATTCGGGCCCCTGTCCAAATCCGGAGCTTTGTCGCAGGAAAGTCAAACTGACTTGTAAATGTAAGAGGTTGAAGAAGGAGTTCTCGTGTGAGACTGTTCGGAACAATGCGGCGAAAGTTGAATGTGATGAGATTTGTAACCGGAAGAAAGAGGAAGACAGGAAGCAGCAAGAAATGATCAATGAACAGAAACGTAAAGAGGAGGAGTTGAAGAATGAGAGGGAATTGGCAAAGTATAAGAAAATATTTGAGAGTAAGAAGAGGACGAGAGATCGACGGGCGCACGAAGAGGAGGAAGAAGTCACTTTTATTAAAAAATATTGGTTTTTGATAACGACATTCACGGCAGTTGTTTTATCTGCAGTGGTGTTTTTTATACTTAAGTAA
Protein Sequence
MAARKKESNVWKKNTNHNRGGNTLVNSPTPAELKFKEAHGKLQAAVQKYVQDYESSSSEDELESDNIIGEIIKNYTKTGAKDEYLGRTKTFLQDSFLSGTVTCLICISRIKRDSSIWNCNECYCVFHLTCIQRWSKDSIFQQKQIQEGPIQVQKVTLTWGCPKCRHNYQLEDIPDKYYCFCGKTTNPELQPFLVPHSCGDICGKDLVPLCGHRCLLLCHPGPCPPCPVTVSVTCYCGKKQPATRRCSDKKWSCGGPCGKLLTCQKHSCSEVCHPGDCKPCPKKSLQKCLCKTSQKLRDCATPIWQCDRVCNKPLQCGNHSCSIVCHEGICDSCPLTKQRTCPCGKSKYQLPCTEETPTCQDTCDKLLTCSLHRCNQRCHKDACGACLEIVEKSCKCGLHSKEVHCSKPYFCETKCKRMRDCNKHPCNKKCCDGSCPPCEKPCGRTLNCGNHKCNSVCHRGLCYPCNQTDVVTCRCGQTKLTVPCGRKHKTRPPKCSKLCLIPPDCHHEKREPHKCHFGDCPPCKQICNKPRSKCPHLCSASCHSAVVVKIESKKASMPWEQTKPQLERKALACPDCEVPVSVTCLGEHETCDWPCYKAVPSSCHRPCGRQLTCENHTCTLPCHVVDNSPNKISAGQNCEICENPCSKPRPEGCQHDCPKPCHPGPCPPCKQMLRIRCHCGLNQPYVSCNDWLSPEKREEIQSCGNQCPKNFDCGHRCRANCHSGPCPNPELCRRKVKLTCKCKRLKKEFSCETVRNNAAKVECDEICNRKKEEDRKQQEMINEQKRKEEELKNERELAKYKKIFESKKRTRDRRAHEEEEEVTFIKKYWFLITTFTAVVLSAVVFFILK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01481360;
90% Identity
-
80% Identity
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