Tmad000563.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- stc
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000096.1:4981736-4984797[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2 1.7e+04 -5.4 1.8 15 18 236 239 235 239 0.58 2 15 1.8 1.6e+04 -4.0 3.0 6 10 266 270 262 270 0.61 3 15 0.17 1.5e+03 -0.7 0.3 4 10 296 302 295 302 0.95 4 15 7.1e-06 0.062 13.3 13.1 4 18 310 324 308 325 0.93 5 15 6.9e-08 0.0006 19.7 10.6 1 18 361 378 361 379 0.97 6 15 1.4 1.2e+04 -3.6 0.7 6 10 409 413 408 416 0.71 7 15 1.5e-10 1.3e-06 28.3 10.8 1 18 419 436 419 437 0.97 8 15 5e-07 0.0043 17.0 16.0 4 19 484 499 477 499 0.87 9 15 1.2 1e+04 -3.4 2.0 5 10 528 533 528 533 0.93 10 15 0.034 2.9e+02 1.6 12.1 1 11 539 549 539 561 0.90 11 15 2.4e-10 2.1e-06 27.6 14.5 1 18 566 583 566 584 0.99 12 15 2 1.7e+04 -4.6 1.2 6 10 613 617 612 617 0.67 13 15 0.00046 4 7.5 11.7 1 19 623 640 623 640 0.89 14 15 3.1e-08 0.00027 20.8 12.5 1 19 676 695 676 695 0.97 15 15 7.6e-05 0.66 10.0 15.9 1 19 705 724 705 724 0.97
Sequence Information
- Coding Sequence
- ATGTCGTATTGGGGTCCCTACGAAGATCAGATGAATGGAGGATTTCCAGGATGTAATCCAGAATATGTTCAATATTTCAACAACATGTCTTATTATAATGATCCTAATGGTGCCAACTTCAGTGCCGTAAATACGGGTTACAATTATTATGATGGGCAAACGTACCAGAATAATTATCTGGAACAGCCTGGAACCAGTCAGGTGACTAATAATTGGGCCCCAAATCCCTCTAATGAGGATGTTGGAGCCGGAACTAAGAAAAAAACGAATGAAAGGAAGAATTGGAATAACGGAAGGAAGAATGAAAGGTATGGAAGTGGACGCACGTTTACTAGGAGTAAGCCTGAACAAAAGAAGTGTCTAGAAAATGATGAAAAAGTAGATAAGTTTAATCAGAAACAAGACGGAAGGAGTCAAAATAGTAACAGTAGATATAGGAATAATTATAGAAGTAGGGATAAGTATGATTTTTATGATGGGAGAGGGTATGGAAAATATGGGAAGGCTAATAGGAGTTACGAGGATAATGGGGCTAGTGGCCGAGATTGGCGTTCAAATAACACAAATCGCAAGTGCACTAACAACGTGCAAAAGAAGTTTGACGCAGCCTCGCAGCGTGAACGTCTTGAGCAGATGCTCTCGCGTCGCACACTCGAGTGTCTCGTCTGTTGCGAAAAAATCAAACACACTGACAAAATCTGGACTTGTCAGCAGTGCTACCATATCTTCCACCTCAACTGTACCATCGCCTGGGCAAACTCCTCAAAACTGGATTCTGGATGGCGTTGTCCAGCTTGTCAAAATGTCTGTAGCGACATTCCTAAACAGTACACTTGCTACTGCGGCAAGACTGTGGAGCCACGGCCCCTTCCGGGCGTAGTCCCGCATGCTTGTGGCGAATTGTGTGAAAAAACGCGCCGTTGTGACCACAAATGCACCATTCTGTGCCATCCGGGGCCCTGTCCAGATTGTAACGCTATGGTGGCAAAGCCCTGCGGATGTGGGGTCACCTCACAAACCGTAAAATGCAGCGCTGATACCGAAATTGTTTGTGGGGCCATTTGTGGGAAGAAATTGTCATGTGGGGTGCATGAATGCAGGGCGAAGTGCCACGTGGGGCCATGTATGGAATGCGACAGGGAGTTGCGACAGATTTGTTACTGCGGGAAGGTGGGGCGTAAAGTGAAATGTAGGGAAGAGTTCAAAGGGGCGGAGAATTATTCATGTGGGGAACTTTGTGGAAAGGGTTTGAGTTGTGGGAATCACAAATGCACCAAGGTGTGTCACGAAGGGGATTGTGAGGTGTGTCTTAGAGATGTGGAGGAGGTTAAGACGTGTCCTTGCGGGAGGACTGAATTGAAAGAGAGAAGAGAATCGTGTCTGGATCCTATACCTTGCTGTGATAAAATTTGTGGGAAAATACTAAATTGTGGGCAACCCGCAGCCCCCCACTCCTGTAAACTTCCTTGTCACGAAGGTCCTTGTCCTCCATGTCCCCTCACGACTTTGATTCGTTGTCGCTGCGGTCACATGGACCGGGAAATCCCCTGCGGACAAGTGACGACGAAAGCCGACGATGCCCGATGCGAGAAAAAATGTACCAAGAAACGCCTCTGTGGCAAACATCGTTGCAATCAACGCTGTTGTATTGAAATCGAGCACATCTGTCCCCTCCCTTGCAACCATATGCTCGCTTGTGGTCAACACCGTTGCGAGAGGACGTGTCATAGTGGGCGGTGCCCACCGTGCATAGAGACCAGTTTCGACGAATTGTATTGCGAGTGTGGAGCTAACGTTTTGTACCCGCCAATTCCGTGCGGAACGAAACCGCCTCCTTGCAACAATCCGTGTTCTAGGCCACGCCCTTGTGGCCATGACGCCAATCACGCCTGTCACACGGGGGCGTGTCCACCCTGTACCGTCTTATGCAAAAGGTGGTGTTACGGGAAACACGAGCAGAGGTCGGCCATTCCGTGCTACCAAGAGGATTTCAGTTGTGGACTGCCGTGTGGGAAAGCAATGCCATGTGGGGCACACAAGTGTGACAAGCCTTGTCATTTGGGAGCGTGTCCTTTGCCGTGTAAACAGAAATGTAACGTAAAGAGAGTTCAATGCGGGCATCCATGCGGAGTCACGTGTCACGAAGGGGCGTGTCCAGACACGCCCTGCAAACAAATGGTACCGGTCACGTGCCCTTGTGGGTTGCAGAAAGCGACAAGGCCTTGTATTGAGTTAGCCGAGGCGTACAAGGAGATCGAAATGGCGAGTTTGAAGGACAAAATGGCCGATTTATTAAAAGATCAAGCTGTGGATATCAGCGATATTGTTAACAAACCCAAAAGACCATCAATTTTAAAAATATTGGAATGCATGGAAGAATGTCGGGTTCTCGAACGCAACCGGCGCCTAGCTATAGGTCTCCAGATCCGCAATCCCGATTTGAGTCAAAAGCTAACTCCCCGTTATTCCGATTTTATGCGAAATTGGGCGAAGAAAGACTCCCAGTTTTGCCAAAAAGTCCACGATAAATTAACCGAGCTAGTTCAATTGGCCAAGCAGAGCAAACAGAAGAGTCGTTCATATTCTTTCGAGTCAATGAATAGGGATAAAAGACATTTTGTGCACGAATATTGTGAACATTTCGGGTGCGAAAGCGCCGCTTACGATGCAGAGCCAAACAGAAATATCGTCGCGACAGCTTTCAAAGATAAGTCTTGGTTGCCGAGTATGAGTCTATTAGAGTTTATTCAAAGGGAAAACGGGCAAAGGAAAGTTCCAGGGCCGGTTTTGAGCAAAGGGACGTTAGGGAAATCGGAAACTGTTGCCTTGAAATTGCCCGGAAGGGGACAGAGGAGTACGCCACCAGGAGAAACCGTGGATTATTTCGATAACCCCCCAGTGTAA
- Protein Sequence
- MSYWGPYEDQMNGGFPGCNPEYVQYFNNMSYYNDPNGANFSAVNTGYNYYDGQTYQNNYLEQPGTSQVTNNWAPNPSNEDVGAGTKKKTNERKNWNNGRKNERYGSGRTFTRSKPEQKKCLENDEKVDKFNQKQDGRSQNSNSRYRNNYRSRDKYDFYDGRGYGKYGKANRSYEDNGASGRDWRSNNTNRKCTNNVQKKFDAASQRERLEQMLSRRTLECLVCCEKIKHTDKIWTCQQCYHIFHLNCTIAWANSSKLDSGWRCPACQNVCSDIPKQYTCYCGKTVEPRPLPGVVPHACGELCEKTRRCDHKCTILCHPGPCPDCNAMVAKPCGCGVTSQTVKCSADTEIVCGAICGKKLSCGVHECRAKCHVGPCMECDRELRQICYCGKVGRKVKCREEFKGAENYSCGELCGKGLSCGNHKCTKVCHEGDCEVCLRDVEEVKTCPCGRTELKERRESCLDPIPCCDKICGKILNCGQPAAPHSCKLPCHEGPCPPCPLTTLIRCRCGHMDREIPCGQVTTKADDARCEKKCTKKRLCGKHRCNQRCCIEIEHICPLPCNHMLACGQHRCERTCHSGRCPPCIETSFDELYCECGANVLYPPIPCGTKPPPCNNPCSRPRPCGHDANHACHTGACPPCTVLCKRWCYGKHEQRSAIPCYQEDFSCGLPCGKAMPCGAHKCDKPCHLGACPLPCKQKCNVKRVQCGHPCGVTCHEGACPDTPCKQMVPVTCPCGLQKATRPCIELAEAYKEIEMASLKDKMADLLKDQAVDISDIVNKPKRPSILKILECMEECRVLERNRRLAIGLQIRNPDLSQKLTPRYSDFMRNWAKKDSQFCQKVHDKLTELVQLAKQSKQKSRSYSFESMNRDKRHFVHEYCEHFGCESAAYDAEPNRNIVATAFKDKSWLPSMSLLEFIQRENGQRKVPGPVLSKGTLGKSETVALKLPGRGQRSTPPGETVDYFDNPPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01480536;
- 90% Identity
- iTF_01480536;
- 80% Identity
- -