Tcas004549.1
Basic Information
- Insect
- Tribolium castaneum
- Gene Symbol
- stc
- Assembly
- GCA_000002335.3
- Location
- NC:12159910-12163310[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2 1.3e+04 -5.4 1.8 15 18 233 236 232 236 0.58 2 15 1.8 1.1e+04 -4.0 3.0 6 10 263 267 259 267 0.61 3 15 0.17 1.1e+03 -0.7 0.3 4 10 293 299 292 299 0.95 4 15 7.1e-06 0.044 13.3 13.1 4 18 307 321 305 322 0.93 5 15 2.5e-07 0.0016 17.9 11.9 1 18 358 375 358 376 0.97 6 15 1.1 7.2e+03 -3.3 0.4 6 10 406 410 405 413 0.75 7 15 2.4e-10 1.5e-06 27.6 12.9 1 19 416 434 416 434 0.99 8 15 4.9e-07 0.0031 17.0 16.0 4 19 481 496 474 496 0.87 9 15 1.2 7.5e+03 -3.4 2.0 5 10 525 530 525 530 0.93 10 15 0.034 2.1e+02 1.6 12.1 1 11 536 546 536 558 0.90 11 15 2.5e-10 1.6e-06 27.5 14.8 1 18 563 580 563 581 0.98 12 15 2 1.3e+04 -4.6 1.2 6 10 610 614 609 614 0.67 13 15 0.00036 2.2 7.9 12.3 1 19 620 637 620 637 0.93 14 15 2.5e-07 0.0016 17.9 9.8 1 19 673 692 673 692 0.96 15 15 3.6e-05 0.23 11.1 17.2 1 19 702 721 702 721 0.97
Sequence Information
- Coding Sequence
- ATGTCGTATTGGGGCCCCTACGAAGATCAGTTGAATGGCGGATTCCCAGGATGTAATCCAGAATATGTCCAATATTTCAACAACATGTCTTATTACAATGATCCCAACAGTGCCAATTACAGTGCCGTAAATTACTATGACGGTCAAACAACGTACCAGAATAACTATTTGGAGCAGCCTGGAACCAGTCAGGTGACTAATAACTGGGCCCCAAATCACTCTAATGAGGATGTTGGGGCCGGGACTAGGAAAAAAACGAACGAAAGGAAGTACTGGAATAACGGGAGGAAGAATGAAAGGTACGGGAGTGGTCGCACGTTTACTAGAAGTAAGCCTGAGCAAAGGAAGTATCCAGAAAATGATGAAAAAGTAGATAAGTTTAATCAGAAGCAAGACGGGAGGAGTCAAAATAGTAACACTAGGTTTAGGAACAATTATAGAAGTAGGGATAAGTATGATTTTTACGACGGGAGAGGGTATGGGAAATACGGGAAGTCTAGTAGGAGTTACGAAGATAACGGGGCCAGTGGACGGGACTGGCGCTCCAGTAACGCAAATCGCAAGTGCGCCAGCAACGTGCAAAAGAAATTTGACGCCGCCTCTCAGCGCGAGCGCCTCGAGCAGATGCTCTCGCGTCGCACGCTGGAGTGCCTCGTCTGTTGCGAAAAAATCAAACACACTGACAAAATCTGGACTTGTCAGCAGTGTTACCACATCTTCCATCTCAACTGCACCATCGCCTGGGCCAATTCGTCAAAACTAGATTCAGGCTGGCGTTGTCCAGCTTGTCAAAACGTTTGCAGCGACATTCCCAAACAGTACACTTGCTACTGCGGCAAAACGCTCGAACCGCGCCCCCTTCCAGGCGTAGTCCCGCACGCTTGTGGCGAATTATGCGAAAAAACGCGCCGTTGTGACCACAAATGCACCATTCTGTGCCACCCGGGGCCCTGTCCCGACTGCAACGTCATGGTGGCAAAGCCCTGCGGTTGTGGGGCCACCACACAAACAGTCAAATGTAGCGCTGATACCGAAATTGTTTGTGGCGCTATCTGTGGAAAAAAACTCTCATGTGGGGTCCACGAATGCGGGGCGAAGTGCCACGTGGGGCCATGTATGGAATGCGATAGAGAGTTGAGACAGATTTGTTATTGTGAGAAGGTGGGGCGTAAAGTGAAATGTAGGGAGGAGTTTAAAGGAGCGGTGAATTATTCGTGTGGGGAGGTTTGTGGGCGGGGCTTGAGTTGTGGGAATCACACGTGCACTAAAGTGTGTCACGAGGGGGATTGTGAGGCGTGTCCGAGAGATGTGGGGGTGGTTAAGACGTGTCCTTGTGGGAGGAGCGAATTGAAGAAGAGAAGAGAATCATGTCTGGATCCTATACCGTGCTGTGATAAAATTTGTGGGAAAATCCTAAATTGTGGGCAACCGGCAGCCCCCCACTCCTGCAAACTTCCATGTCACGAGGGTCCGTGCCCCCCATGCCCCCTTACGACCTTGATTCGTTGTCGTTGCGGTCACATGGACCGGGAAATCCCCTGCGGACAAGTAACGACGAAAGCCGACGATGCCCGATGTGAGAAAAAATGTACCAAGAAACGCCTCTGTGGCAAACACCGATGCAATCAACGTTGTTGCATCGAAATCGAACACATTTGTCCCCTCCCATGCAATCACATGCTCGCTTGTGGCCAACACCGTTGCGAGAGGACGTGTCACAGTGGGCGGTGCCCACCTTGCGTGGAAACAAGTTTCGACGAATTGTATTGCGAATGCGGAGCTAACGTCTTATACCCGCCCATTCCATGCGGCACAAAACCGCCCCCTTGCAATAATCCATGTTCCAGGCCACGCCCATGTGGCCACGAAGCCAATCATGCGTGCCACACAGGGGCGTGTCCACCGTGTACCGTTTTGTGCAAGAGGTGGTGTTACGGCAAACACGAGCAGAGATCGGCTATTCCCTGTTATCAGGAGGATTTCAGTTGTGGATTACCGTGTGGGAAGGCCATGCCGTGTGGGGCACATAAGTGTGACAAGGCGTGTCATTTGGGGGCGTGTACGTTGCCATGCAAACAGAAATGTAACGTGAAGAGAGTCCAATGCGGGCATCCGTGCGGGGTCACGTGTCACGAAGGGCCGTGTCCTGACACGCCCTGTAGGCAAATGGTGCCGGTCACGTGCCCCTGTGGCTTGCAGAAAGCAACAAGGCCTTGCATCGAGTTGGCTGAGGCGTATAAGGAGATCGAAATGGCGCATTTGAAGGACAAAATGGCCGATTTGTTGAAGGATCAAGCTGTGGACATCAGCGATATCAACAAAGCCAAAAGGCCGTCGGTTTTGAAAATATTGGAGTGCACCGAAGAGTGTCGGGTTCTGGAGCGCAACCGGCGGCTGGCTATCGGTCTGCAGATTCGCAACCCGGATTTGAGTCAAAAACTGACTCCTCGTTACTCCGATTTTATGCGAAATTGGGCGAAAAAAGACCCGCAGTTTTGCCAAAAAGTGCACGAAAAGCTCACCGAGTTGGTCCAATTGGCTAAGCAGAGTAAACAAAAGAGTCGTTCGTATTCTTTTGAGTCAATGAACAGAGATAAGAGACATTTCGTGCACGAGTATTGTGAGCATTTTGGGTGTGAAAGCGCCGCCTACGATGCGGAACCCAACCGAAATATCGTTGCAACTGCCTTTAAGGACAAGTCGTGGTTGCCGAGTATGAGTCTATTGGAGTTTATTCAGAGGGAAAATGGGCAGAGGAAGGTTCCAGGGCCGGTTCTGAGCAAAGGGACGTTGGGGAAGTCGGAGACCGTTGCCTTGAAATTGCCTGGAAGGGGGCAGAGGGGAACGCCATCAGGAGAGACCGTGGATTATTTCGATAACCCCCCAGTGTAA
- Protein Sequence
- MSYWGPYEDQLNGGFPGCNPEYVQYFNNMSYYNDPNSANYSAVNYYDGQTTYQNNYLEQPGTSQVTNNWAPNHSNEDVGAGTRKKTNERKYWNNGRKNERYGSGRTFTRSKPEQRKYPENDEKVDKFNQKQDGRSQNSNTRFRNNYRSRDKYDFYDGRGYGKYGKSSRSYEDNGASGRDWRSSNANRKCASNVQKKFDAASQRERLEQMLSRRTLECLVCCEKIKHTDKIWTCQQCYHIFHLNCTIAWANSSKLDSGWRCPACQNVCSDIPKQYTCYCGKTLEPRPLPGVVPHACGELCEKTRRCDHKCTILCHPGPCPDCNVMVAKPCGCGATTQTVKCSADTEIVCGAICGKKLSCGVHECGAKCHVGPCMECDRELRQICYCEKVGRKVKCREEFKGAVNYSCGEVCGRGLSCGNHTCTKVCHEGDCEACPRDVGVVKTCPCGRSELKKRRESCLDPIPCCDKICGKILNCGQPAAPHSCKLPCHEGPCPPCPLTTLIRCRCGHMDREIPCGQVTTKADDARCEKKCTKKRLCGKHRCNQRCCIEIEHICPLPCNHMLACGQHRCERTCHSGRCPPCVETSFDELYCECGANVLYPPIPCGTKPPPCNNPCSRPRPCGHEANHACHTGACPPCTVLCKRWCYGKHEQRSAIPCYQEDFSCGLPCGKAMPCGAHKCDKACHLGACTLPCKQKCNVKRVQCGHPCGVTCHEGPCPDTPCRQMVPVTCPCGLQKATRPCIELAEAYKEIEMAHLKDKMADLLKDQAVDISDINKAKRPSVLKILECTEECRVLERNRRLAIGLQIRNPDLSQKLTPRYSDFMRNWAKKDPQFCQKVHEKLTELVQLAKQSKQKSRSYSFESMNRDKRHFVHEYCEHFGCESAAYDAEPNRNIVATAFKDKSWLPSMSLLEFIQRENGQRKVPGPVLSKGTLGKSETVALKLPGRGQRGTPSGETVDYFDNPPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481359;
- 90% Identity
- iTF_01481359;
- 80% Identity
- -