Basic Information

Insect: Tribolium madens
Gene Symbol: -
Assembly: GCA_015345945.1
Location: JADDYM010000071.1:5141436-5144992[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.045 3 8.4 0.1 2 23 217 239 216 239 0.89

2 17 0.00056 0.038 14.4 0.1 1 23 284 307 284 307 0.97

3 17 0.27 18 6.0 0.1 1 23 345 367 345 367 0.97

4 17 8.8 5.9e+02 1.2 0.5 3 23 407 429 405 429 0.80

5 17 0.00045 0.03 14.7 4.6 1 23 432 455 432 455 0.96

6 17 0.013 0.9 10.1 2.1 2 23 462 484 461 484 0.95

7 17 0.00015 0.01 16.2 3.6 1 21 579 599 579 600 0.95

8 17 0.015 1 10.0 0.9 2 23 612 634 611 634 0.91

9 17 0.09 6.1 7.5 0.7 1 23 637 660 637 660 0.95

10 17 0.17 11 6.7 0.2 3 23 667 687 665 687 0.95

11 17 4.1 2.7e+02 2.3 0.1 1 23 691 714 691 714 0.93

12 17 0.11 7.3 7.2 0.4 2 23 721 743 720 743 0.95

13 17 0.033 2.2 8.9 0.5 2 23 752 774 751 774 0.94

14 17 0.017 1.1 9.8 0.1 3 23 781 802 780 802 0.95

15 17 3.2 2.2e+02 2.6 4.9 3 23 913 934 912 934 0.95

16 17 0.48 33 5.2 0.1 2 23 941 963 940 963 0.92

17 17 0.18 12 6.6 0.9 1 23 976 998 976 998 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.045	3	8.4	0.1	2	23	217	239	216	239	0.89
2	17	0.00056	0.038	14.4	0.1	1	23	284	307	284	307	0.97
3	17	0.27	18	6.0	0.1	1	23	345	367	345	367	0.97
4	17	8.8	5.9e+02	1.2	0.5	3	23	407	429	405	429	0.80
5	17	0.00045	0.03	14.7	4.6	1	23	432	455	432	455	0.96
6	17	0.013	0.9	10.1	2.1	2	23	462	484	461	484	0.95
7	17	0.00015	0.01	16.2	3.6	1	21	579	599	579	600	0.95
8	17	0.015	1	10.0	0.9	2	23	612	634	611	634	0.91
9	17	0.09	6.1	7.5	0.7	1	23	637	660	637	660	0.95
10	17	0.17	11	6.7	0.2	3	23	667	687	665	687	0.95
11	17	4.1	2.7e+02	2.3	0.1	1	23	691	714	691	714	0.93
12	17	0.11	7.3	7.2	0.4	2	23	721	743	720	743	0.95
13	17	0.033	2.2	8.9	0.5	2	23	752	774	751	774	0.94
14	17	0.017	1.1	9.8	0.1	3	23	781	802	780	802	0.95
15	17	3.2	2.2e+02	2.6	4.9	3	23	913	934	912	934	0.95
16	17	0.48	33	5.2	0.1	2	23	941	963	940	963	0.92
17	17	0.18	12	6.6	0.9	1	23	976	998	976	998	0.96

Sequence Information

Coding Sequence: ATGGAGACGAAACTGTGCCGAATATGCGGAAAACTCGGCCAAAACTACATGAATATTTTCCGGACCGAAGGCCTGAAGAACAAGATCGAAACATGTCTCCCGATCATTGTGTCGCCCCATTCGCTCCTCCCCGACACGATCTGTGGCGAATGCTCGGAGAATGTGGACAATTTCTACAGTTTTATCAAGAATTGTCTCCAAAATATCATCATTCTTGAAGCCCAATATGACATAAATGAGTCTTGTTTGAAGACGAAGCGGAAGCACGACAAGGGATGCACCACCGACTTGTCCCGAAAAAGCGAGAAAAATACTCAAACTATCGATTATCTTGATCTCCTCCTCAAAGAAAACGAATTCCAGTTGAATTTCCCAGTCCCCAATCTCAAAAAACTCGTCGATTATGACGATTCCGATTGTGAAGAGTCGAAAGAATCCTCAATTTTTGATAATTTCGGCCGAAAGTACTTCGACGATGCAGAAAACTACCTTATCGACGAAATAACTCAACGCAAAAAGCGCAAAAATGAGGATACGATCGAATCCTCACGTGCGAAAATCTGCAAAATCGAAACCACCAATCGTCGAAAAAGCAAACAACCGAAAAAACTCGAACTAAAACCCGATTTTCTAGGGGAATTACCTCAAGTGTGTTTACTATGCGATGAACAATTCACCGGTCCTTCCATGTTGGCTAGTCACGTGTTTGAAACTCACGGCATTGACATGGCGGCCGTTGCCAGTGATACCAACGACAAAAAGAAAAAGTTACCAAATCTACTCAAGATCTCCGATCTCAGGAAAAGCGACTCGATTGAAGAAGAAGAACCGCCAACTCTTCTTCCGAGTTTCGTTTGTTCTCTCTGTCCGGCCATGTTTACGTCACGACCGGACCTTTTCGGCCATCTTCGGGTCAAACATTCCGACCAATCAGCTCTCTTATGTGGCATGTGTCTGTATCAAGCCTCCTCATTGACTAATCTCCAATCACATGTCGAGTTATGCTCCCACCAACATCCAATCACAACCAAGTATGTCTGTCAAGTGTGTCGCTACGGTGATGATAATTCGAAATCATTGGAGAATCATATTCTCGTCCACGACTTCCTATTGGATGCGTGTAAAAAACAATCGAAGATGTTCGACCCAGCCGACTATATTGAAACGAATGGTAATTACGAATCAGGAGGGTCCTCACCTCTCTCGAAAAGTTTAGCGTGTAGTGAATGTGGAATGGACGATTTTGATAATTTTAAAGAGTTTAGTACGCATAGAAGGAGCCAACATTCGATTTTCCACTGCGATCTATGTAATAAATTCTATGGAAGAAACTCACATTTATGGAAACACGTCAATAGATTACATAAAGGACATCCAAGTATCACTTGTCAGTTGTGCTACAAGACGAGTGCTTCAAAATACCACTTGGCCCAACATTTCAACAAAATCCATAGTACGAAAAGTTGTAAAAAGGGCGAAAGTCAGCTGAATTTTGACAATACTGATGATTTTATGTCACAGAAATTCCAAGCTTTTGATTTTCAATCGGTCAAACAGAGTTTCATGCGACAAGAATTGTTAGAACAGCAAGAGAAAAGATCGGAGAATGACGACAATTCGAATAATCGTTTATCGGATCAGGAACCACCATCTGCACCCAAAGAAATCGACTCATCTAGTGACCTTTACACCAACATTATTACCAACTACACACCACCGGCCAACGAAGGCGAATTCAAATGCCCCAAATGCGGGAAAGGTTTCCACAAGAAGACTCTTCTAAAGAAGCACAAGAAGAATTGTCGGCCACGTCTCCAAAAAGACTTACTTACACGATGTAAATCATGCGCTCGTATCTTTAAAGATCGTCAAAGTCTTGCCAAACATTTGGTTAATTATCATTCCGAATACGCGTGTGAAATATGCGGTCAAAAAGTACAAAGTAAATGCGAAATTGTCTCGCATATAAGATTCACACATCCCGGTTGTCACTTGTTTTGTACAATTTGTGGTAATATATTGCGTAGTCGGAATGATATGGCCGACCACACACGTGACCATATGAATAGTTACGTGTGTCAGTTCTGCGCAGACGCATTACCGAGTAAAATCAAACTTAAAATGCACATTTTAAGTCTACATCGAAAAATCTTAAGTTTGAGTTGTGGTGTGTGTTTGAAGTTGTTTGAGAGTCAACATGTATTAAGAGATCACGTTAGGTTGGTACATAGAGATCAGTTGGCACCACTGACTTCGTGTCCAGTTTGTGGTAAGAATTATGGGTCGAAATGGAAAACTTACGACCATTTGAATAAATCACATGGGCGGATTTTTAAAGCTTGTAAGGCGTGTCTTGAAGTTTTTGACAACGAAAGTCAATTACAAGTCCATTATGACACTGTACATGGTAGTGGGGGTAAAAATAATATACCGGTAGTGAGTCAGGTTAGCCAACCACAGAATCATTGCGAGAGTGAGAGTGACAGAGAGACAAATAGCGAACAAAGTGATGAACAAGAAGAGGACGAACAGAAAGACTATTTCTTAGATTTGAAAGATAGTAAAATATCACTATTGGAAAAACGATTATTGGGTAAGAAAATCACCGAAGAGAAAGTTTTACCACCGAAAATCAACAATAAAAAAATCAAAGAGAAAGAAATCGATTTCGACACTAACCCTCAACATAATAGTTCAAAACGTACAGTTTATGTCAATAGTAATGACCCGTCTTTTTGTGAAATATGTCATAAAACGTGGCCTGCTAAGAAACACCTATGGCAACACTATATTCGTTGTCATAAATCAGTGGCGGCTACGGTTTGTGGCATTTGTTTGAAAACAAATTCGTCGTATGGTGCGCTCCAAGCCCACTTGATGGAAACCCATCCGACGCTTCTTCACGGTCAAGGTTTCGGTTCGAATTTCATTTGTCGGATTTGTGGTCGTTATCACAACGCGTCGAGTAAATTAAAATTGCATATGGCCATCCATGAGAATTTTGATTGGTCAATGCTTGAGCCGAAACAAGAGAACAAGAAGGAAGAAAACGGCTTTCAGGACACTTCTGAGATAAACTACGAGAGTTTGATTGAGCAAGTTGAGTGTTCGTCAGGGTCGGAGAGTGAAGTTGTTGAGACGAAAGATAAAGAATCGAGTTCGGAGGATGAGGAGAGTGACAGTGATGTGTCGGAAATGTCCGATAATTTGGGTAAGACGAACGAAGCGAGTTCGGTGAGTGAGGAAGAGGAGGAGGAGTCGAGTGGGAGTTGGTTTATGGTCAAGAGTGAGGAGAGTGAAGAAGAGGAGAAGTTGGAGGAGTTGGATTCGGCGATTAATTCAATCAAGTATGAATGTGTGGAGAAAGTTGAGGAGGAAATTGAGGACGAATATTGCGATTTGCAAGCGCAAAGTTTGAATGATAACGAAATTGAGTCGGCGGTGGGGAGTATATTGTAA
Protein Sequence: METKLCRICGKLGQNYMNIFRTEGLKNKIETCLPIIVSPHSLLPDTICGECSENVDNFYSFIKNCLQNIIILEAQYDINESCLKTKRKHDKGCTTDLSRKSEKNTQTIDYLDLLLKENEFQLNFPVPNLKKLVDYDDSDCEESKESSIFDNFGRKYFDDAENYLIDEITQRKKRKNEDTIESSRAKICKIETTNRRKSKQPKKLELKPDFLGELPQVCLLCDEQFTGPSMLASHVFETHGIDMAAVASDTNDKKKKLPNLLKISDLRKSDSIEEEEPPTLLPSFVCSLCPAMFTSRPDLFGHLRVKHSDQSALLCGMCLYQASSLTNLQSHVELCSHQHPITTKYVCQVCRYGDDNSKSLENHILVHDFLLDACKKQSKMFDPADYIETNGNYESGGSSPLSKSLACSECGMDDFDNFKEFSTHRRSQHSIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLAQHFNKIHSTKSCKKGESQLNFDNTDDFMSQKFQAFDFQSVKQSFMRQELLEQQEKRSENDDNSNNRLSDQEPPSAPKEIDSSSDLYTNIITNYTPPANEGEFKCPKCGKGFHKKTLLKKHKKNCRPRLQKDLLTRCKSCARIFKDRQSLAKHLVNYHSEYACEICGQKVQSKCEIVSHIRFTHPGCHLFCTICGNILRSRNDMADHTRDHMNSYVCQFCADALPSKIKLKMHILSLHRKILSLSCGVCLKLFESQHVLRDHVRLVHRDQLAPLTSCPVCGKNYGSKWKTYDHLNKSHGRIFKACKACLEVFDNESQLQVHYDTVHGSGGKNNIPVVSQVSQPQNHCESESDRETNSEQSDEQEEDEQKDYFLDLKDSKISLLEKRLLGKKITEEKVLPPKINNKKIKEKEIDFDTNPQHNSSKRTVYVNSNDPSFCEICHKTWPAKKHLWQHYIRCHKSVAATVCGICLKTNSSYGALQAHLMETHPTLLHGQGFGSNFICRICGRYHNASSKLKLHMAIHENFDWSMLEPKQENKKEENGFQDTSEINYESLIEQVECSSGSESEVVETKDKESSSEDEESDSDVSEMSDNLGKTNEASSVSEEEEEESSGSWFMVKSEESEEEEKLEELDSAINSIKYECVEKVEEEIEDEYCDLQAQSLNDNEIESAVGSIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01480431;
90% Identity: iTF_01480431;
80% Identity: -