Tmad009338.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- ZIPIC
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000003.1:6256310-6259129[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.8 1.9e+02 2.8 0.4 2 23 7 28 6 28 0.92 2 15 0.85 57 4.4 1.6 1 11 462 472 462 485 0.82 3 15 0.0067 0.45 11.1 0.2 2 23 559 581 558 581 0.95 4 15 0.013 0.89 10.1 2.0 1 23 589 611 589 611 0.98 5 15 3.5e-05 0.0023 18.2 1.1 2 23 614 635 613 635 0.97 6 15 0.0018 0.12 12.8 1.6 1 23 641 663 641 663 0.98 7 15 6.5e-06 0.00044 20.5 4.1 2 23 670 691 669 692 0.95 8 15 1.2 81 3.9 2.1 6 23 706 723 704 723 0.95 9 15 0.00012 0.0079 16.6 5.4 2 23 729 751 728 751 0.96 10 15 0.11 7.3 7.2 0.0 2 23 767 787 766 787 0.96 11 15 0.00022 0.015 15.7 0.8 1 20 793 812 793 815 0.91 12 15 9e-05 0.0061 16.9 0.2 1 23 823 845 823 845 0.99 13 15 0.0023 0.16 12.5 5.5 1 23 851 873 851 873 0.98 14 15 6.1e-07 4.1e-05 23.8 4.0 1 23 879 901 879 901 0.98 15 15 0.0011 0.076 13.5 7.0 1 23 907 929 907 930 0.96
Sequence Information
- Coding Sequence
- ATGGATACGAGCAACATATCCTGTCCTGTTTGTACATTATATCTCAGACCAGGCATAACCCTAAAACACCACTTGAGCAGCCATCCCAAACAGAAAGTGATTGAAGCTCTGGTCCGACTATCTGAGACAGGAGATGTGGAAAAAATCGGGAATTCGTCAACCCACTCCGACTGTGGCACTTCCACCACTCACACGGCTCTAGTAAACCAAACCTGGAATCAGGGCAACTTGGTCAACATGCCCCCCAACATGCCTCCCCTGCAAGGCAACCACGTCTTCATTTACCAACAAAGCATGAGCAGCACGACTGCTCCGTCACAAAATGTACCATCGCAATACGTCATTCCCACAATTTTAAACCCACAGATGATGCCCTACATATACCAACAGCAGTTAATCATGTCAAGTGGCTCCTGTGTTCCTCCCATGCGTACTCTTCCGTTTGAATTACCGTCGACGTCGTCGCAGGAGTGCAACATCACGGAAGCGCCCGAGGACGAAAGGGAATCACTAAAGAAAATCGAGGAAATTGACGAAGCTGAAGATGCGAGTGAAACGTTGAGCGATTCCATCAAAATCGACTGTGATATGCAGGAACAAATCAACAACAGTTTGGATTTGAACGTTTACGAAATAGGGGAGGAAGGTTTCAACGCACAAGATGGGCCCCAAAGCCCCAGTTCCGAAAGTGGCGAGTTGAATAAAGCTTGTCAGACGCAAAATAACTTGACGCCGGAAGAGGAAGTTTCGGAAGAGACTGAACCGAAACAAACCGATTCCGAGTTTTATTTCGTAAACGGGAATGAAAATCAGAGTTATACTTCGGTGGAATTGGGTCAGAATCCAATTTATACGGCTTCGAATATTTTGCAGTCTGATCAGCTAGATTTTGTTGATATGAACGGAGTGCAGATGGTAATTAATGATATAAATGAGTTTGCGGGCAATCAGATTATATCTCAGGTTGAAAATTTTGAAGGTATCGCTCCTGACCGATCGGGAGTTTTAATGACGATTGGTGGAATGGTTGATAGTTCAAAAGATGATTTTTTGGATCAGAGAGACGCGGAAGAGAGTATGTCTCGCGAGAGCTCAAACGTTAATATTCGAGCCGATGAACGGATGCCTCCGAGGGGCGAATTGTCGGGCCAGGAAAGTCTCGGAGGCTCCAGTGATATCACCTGGAATCGGGTGCAATATAACGAAGGCAGCTCAGGGATGTCCACCTCGTACGACCTCCTAACACGCGAAAACTGGGAAGGTTCCGATAGTTCGGACGTCGAAGTTCCGCCTCTTCAAAGCCGGATCCCTTCCCACGTGACTTATCCGGAAGAAGACGACGATAATCCGACTATTGTCAGTTTCACCGGACCTCCTTTAAACTTCAAATGTTCACAGTGTGACCAAGCTTTCAGTTGTCTAAGAGAGAGGAAAGATCACGAGGCTGAGAAACATCCCGAAAAACGCAAACTAAATCGAATCGGCGGCGAATTAGACAAAAAGAAAGTCAAAAAGCTCGTCGTTAAACTAAAATCCGAGAAACCCGAAAGCGAGAATAACTTCGTCTTTACGAATAAATTAAAAATGGAGACTCCAACCGAAACGGAAGTACCGGAAGCACAAATTGAAGAACCTATCACAACCACTCCTGAGATTCCGACCGAATTGAAGTCTGTGTGTCCGATTTGCGGTTGCGTACTAATGAATGCTAAAGCACTGAAAGAGCATAAAATGAGCGTCCATAATATCACAGCACTGTCGCGACATAAATGTATGACTTGTGGTGAATTGTTTCCGAATGATTACAAGTTTTCGCAACATTTACGAATACATCCACTCGAATGTAAAATCTGCGGTCGGTTGTTCTACCGGAGACAAAACATCCAGCTTCATATGAGGCGCCACTTGGGCATAAAACCTTTCAAATGTGACGTATGCCAGAAGGCATTTCTCACGAAACAAAAATTGTTTGAACATAGGAACATCCATACGGGGGAAGCTCCGATTAAGTGTCCTCTATGTGACGAAACGTTCCGTCGACATTCAAACCTAGTCCAACACCGGAACAGACACCACCTCAACATTAAGAAGAAAGTTAAAGATTATATCTGTTTCTGTAAGGAGGTTTTCCATTCGAAAAAAAAACTAGCCTGGCATAAGGAAATCCACGATGCCAAACCGAAATCTTGTACGCATTGTAGCGAGAAATTCATCCATATGTCAAGCTTGACGCGCCATATGCGACGAGCCCATAATGACCGCTTCCTCCCAAACGGTCATAAAAAGCCCGAAAATGTGGAATGTCCGATTTGCAAGGGGGTTTACTTGAAGTCGTCTCTCGACGTCCATATACGTAACCACAGCGGCCAAAGACCGTACGCGTGTCTCATTTGCAATAAGGATTTCACAACGAAATGGAACCTCAAGTTGCACAAATGGACGCACGCGTCACGCGTGTCCAAACCGTTCAAATGCGACCAATGCAAAGGTGCTTTCATACGCGAGTCCGATTATATCGCTCATATGAACTCGCATAAGAGCATAAGGCCGTATACTTGTAACCACTGCGGGGCGCAATTCATCCGCAAATATAACTGCCAAAGGCATGTGAAAGAGCACGAGAATGAGAAAATGTTCAACTGCAAAGTGTGTGGAAAGTCGTTCCATCGGTCGTACTACTTGAAGGATCACATGAGGATCCATAGCGGACTCAGGCCGTATTCATGCCACATTTGCGGCAAGACTTCGACCACAAAGTCCAACCATAACAAGCACGTGCAGATACACCATGCTAGAGAACCGGTCAGTACTGAGAACTAA
- Protein Sequence
- MDTSNISCPVCTLYLRPGITLKHHLSSHPKQKVIEALVRLSETGDVEKIGNSSTHSDCGTSTTHTALVNQTWNQGNLVNMPPNMPPLQGNHVFIYQQSMSSTTAPSQNVPSQYVIPTILNPQMMPYIYQQQLIMSSGSCVPPMRTLPFELPSTSSQECNITEAPEDERESLKKIEEIDEAEDASETLSDSIKIDCDMQEQINNSLDLNVYEIGEEGFNAQDGPQSPSSESGELNKACQTQNNLTPEEEVSEETEPKQTDSEFYFVNGNENQSYTSVELGQNPIYTASNILQSDQLDFVDMNGVQMVINDINEFAGNQIISQVENFEGIAPDRSGVLMTIGGMVDSSKDDFLDQRDAEESMSRESSNVNIRADERMPPRGELSGQESLGGSSDITWNRVQYNEGSSGMSTSYDLLTRENWEGSDSSDVEVPPLQSRIPSHVTYPEEDDDNPTIVSFTGPPLNFKCSQCDQAFSCLRERKDHEAEKHPEKRKLNRIGGELDKKKVKKLVVKLKSEKPESENNFVFTNKLKMETPTETEVPEAQIEEPITTTPEIPTELKSVCPICGCVLMNAKALKEHKMSVHNITALSRHKCMTCGELFPNDYKFSQHLRIHPLECKICGRLFYRRQNIQLHMRRHLGIKPFKCDVCQKAFLTKQKLFEHRNIHTGEAPIKCPLCDETFRRHSNLVQHRNRHHLNIKKKVKDYICFCKEVFHSKKKLAWHKEIHDAKPKSCTHCSEKFIHMSSLTRHMRRAHNDRFLPNGHKKPENVECPICKGVYLKSSLDVHIRNHSGQRPYACLICNKDFTTKWNLKLHKWTHASRVSKPFKCDQCKGAFIRESDYIAHMNSHKSIRPYTCNHCGAQFIRKYNCQRHVKEHENEKMFNCKVCGKSFHRSYYLKDHMRIHSGLRPYSCHICGKTSTTKSNHNKHVQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01480354;
- 90% Identity
- iTF_01480354;
- 80% Identity
- -