Tcas012391.1
Basic Information
- Insect
- Tribolium castaneum
- Gene Symbol
- ZIPIC
- Assembly
- GCA_000002335.3
- Location
- NC:12574591-12578034[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.9 1.7e+02 2.5 0.1 2 23 7 28 6 28 0.92 2 15 0.48 28 4.9 1.7 1 11 456 466 456 479 0.82 3 15 0.0012 0.072 13.1 0.2 2 23 552 574 551 574 0.94 4 15 0.19 11 6.2 1.0 1 23 582 604 582 604 0.95 5 15 2.8e-05 0.0017 18.2 1.1 2 23 607 628 606 628 0.97 6 15 0.0015 0.087 12.8 1.6 1 23 634 656 634 656 0.98 7 15 5.3e-06 0.00031 20.5 4.1 2 23 663 684 662 685 0.95 8 15 0.98 58 4.0 2.1 6 23 699 716 697 716 0.95 9 15 9.5e-05 0.0056 16.6 5.4 2 23 722 744 721 744 0.96 10 15 0.088 5.2 7.3 0.0 2 23 760 780 759 780 0.96 11 15 0.00018 0.011 15.7 0.8 1 20 786 805 786 808 0.91 12 15 7.4e-05 0.0043 16.9 0.2 1 23 816 838 816 838 0.99 13 15 0.0019 0.11 12.5 5.5 1 23 844 866 844 866 0.98 14 15 5e-07 2.9e-05 23.8 4.0 1 23 872 894 872 894 0.98 15 15 0.00092 0.054 13.5 7.0 1 23 900 922 900 923 0.96
Sequence Information
- Coding Sequence
- ATGGACACGAGCAACATATCCTGTCCTGTCTGTACATTGTATCTCAGACCGGGCATAACCCTAAAGACCCACTTGAGCAGCCATCCCAAGCAGAAGGTGATCGAGGCTCTGGTCCGGCTGTCGGAGACCGGAGATGTGGAAAAAATCGGCAACCCCTCCTCCCAGCCCGACCCTGGCGCCTCCACCACCCACACCGCCGTGGTGAACCAGAGCTGGAACCAGGGCGGCTTGGTCAACATGCCCCCCCTGCAGGGCAACCACGTCTTCATCTACCAGCAGAGCATGAGCAGCACGACCGCCTCGCCCCAAAACGTGCCATCGCAATACGTCATTCCCACGATTTTGAACCCGCAAATGATGCCCTACATCTACCAGCAACAGCTGATCATGTCAAGCGGCTCCTGTGTTTCCCCCATGCGGACGCTGCCGTTTGAGTTGCCGTCGACGTCGTCACAGGACTGCAGCATCACGGAGGAGCCCGAGAACGAACGCGACTCGCCGAAGAAAATCGAGGAGATTGACGAAGATGCGAGCGAGACGCTGAGTGATTCGATTAAAATCGACTGCGATATGCAGGAGCAGATCAATAATAGTTTGGATTTGAATGTGTATGAAATTGAGGAGGGTTTTAACGCACAGGAAGGGCCCCCGAGTCCGGACTCCGAGAGCGGCGAGTTGAATAAAGCCTGTCAGACGCAGAACAACAACTTGACCTCGGAAGAGGACGTTTCGGATGAGACTGAGCCGAAACAGGCCGATTCCGAGTTTTATTTTGTGAACGAGAACGAGAATCCGAATTACACTTCGGTGGAATTGGGCCAGAACCCGATTTACACGGCTTCGAATATTTTGCAGTCTGACCAGCTAGACTTCGTTGATATGAACGGAGTCCAGATGGTAATTAATGATATAAATGAGTTTGCGGGCAATCAGATTATATCTCAGGTTGAAAATTTTGAAGGTATCGCTCCTGACCGGTCGGGAGTTTTAATGACGATCGGCGGGATGGTTGATAGTGCTAAAGATGATTTTCTGGATCAGAGAGATGCGGAAGAGAGCATGTCTCGGGAGAGCTCGAATGTTAACATCCGAGCCGACGAGCGTATGCCCCCGAGGGGCGAGCTCTCCGGTCAGGAGAGTCTAGGGGGCTCCAGTGATATCACCTGGAACCGGGTGCAATATAACGAAGGCAGCTCAGGGATGTCCACCTCGTACGACCTCCTAACGCGCGAAAACTGGGAGGCTTCCGACAGTTCCGACGTCGAAGTGCCCCCCCTTCAAAGTCGCATCCCCTCACACGTGACCTATCCCGAGGAGGACGACGACAGCCCCACTATAGTCAGCTTCACCGGACCTCCTCTCAACTTCAAATGTTCGAAATGTGACGAAGCGTTCAGCTGTCTCAGAGAGAGGAAAGAACACGAGGCGGAAAAACATCCCGAAAAACGCAAACTTAATCGAATCGGCAGCGAACTTGACAAGAAAAAAGTCAAAAAACTCGTCGTTAAACTCAAAACTGAAAAGCCCGAAAGCGAGAACAACTTCGTTTTTACGAACAAACTCAAAATGGAAACTCCAAGCGAAGCGGAAACGCCCGAAGCACAAACCGATCCAATCGCCACAACACCACAAATGCCGACCGAATTGAAATCGGTTTGTCCGATCTGTGGCTGCGTACTGAAAAATGCCAAAGCACTGAAGGAGCATAAAATAAGCGTCCACAAAATTACAGCACTGTCGCGCCACAAATGTATAACTTGTGGCGAATTGTTCCCGAATGATTACAAGTTTTCCATACATTTGCGAATACATCCCCTAGAATGTAAAATATGTGGACGCTTGTTCTACCGGAGACAGAACATCCAGCTCCATATGAGGCGCCATTTGGGCATAAAACCCTTCAAGTGTGACGTGTGCCAGAAAGCATTTCTCACGAAACAAAAACTGTTCGAACACAGGAACATCCACACGGGCGAAGCCCCGATCAAGTGTCCCCTGTGTGACGAAACGTTCCGCCGGCACTCCAATTTAGTGCAGCACCGGAACCGGCACCACCTCAATATCAAAAAGAAGGTCAAGGATTACATCTGTTTCTGCAAAGAGGTGTTCCACTCGAAGAAAAAGCTCGCCTGGCATAAGGAAATCCACGATGCCAAGCCCAAATCTTGCACCCATTGTAGCGAAAAGTTCATCCACATGTCGAGCTTGACGCGTCATATGCGCCGTGCGCATAATGAGCGCTTCCTTCCGAACGGGCATAAGAAGGCGGAAAATGTGGAGTGTCCAATCTGCAAGGGGGTTTACCTGAAATCGTCCCTGGACGTCCATATACGTAACCACAGCGGCCAGAGGCCGTACGCGTGTCTCATCTGCAATAAGGACTTCACCACGAAATGGAACCTCAAGCTGCACAAATGGACGCACGCGTCCCGCGTGTCCAAACCGTTCAAATGCGACCAATGCAAGGGTGCTTTCATCCGCGAGTCGGATTACATCGCTCACATGAACTCGCATAAGAGCATAAGGCCGTATACGTGTAACCACTGCGGGGCGCAGTTCATCCGCAAATACAACTGCCAGAGGCACGTGAAGGAGCACGAGAATGAGAAGATGTTCAATTGTAAGGTGTGCGGGAAGTCGTTCCACCGATCGTACTATTTGAAGGACCACATGAGGATCCACAGCGGGCTCAGGCCGTACTCCTGCCACATTTGCGGCAAGACTTCGACCACTAAGTCCAACCATAACAAGCACGTGCAGATACACCATGCCAGAGAACCGGTCAGTACTGAGAACTAA
- Protein Sequence
- MDTSNISCPVCTLYLRPGITLKTHLSSHPKQKVIEALVRLSETGDVEKIGNPSSQPDPGASTTHTAVVNQSWNQGGLVNMPPLQGNHVFIYQQSMSSTTASPQNVPSQYVIPTILNPQMMPYIYQQQLIMSSGSCVSPMRTLPFELPSTSSQDCSITEEPENERDSPKKIEEIDEDASETLSDSIKIDCDMQEQINNSLDLNVYEIEEGFNAQEGPPSPDSESGELNKACQTQNNNLTSEEDVSDETEPKQADSEFYFVNENENPNYTSVELGQNPIYTASNILQSDQLDFVDMNGVQMVINDINEFAGNQIISQVENFEGIAPDRSGVLMTIGGMVDSAKDDFLDQRDAEESMSRESSNVNIRADERMPPRGELSGQESLGGSSDITWNRVQYNEGSSGMSTSYDLLTRENWEASDSSDVEVPPLQSRIPSHVTYPEEDDDSPTIVSFTGPPLNFKCSKCDEAFSCLRERKEHEAEKHPEKRKLNRIGSELDKKKVKKLVVKLKTEKPESENNFVFTNKLKMETPSEAETPEAQTDPIATTPQMPTELKSVCPICGCVLKNAKALKEHKISVHKITALSRHKCITCGELFPNDYKFSIHLRIHPLECKICGRLFYRRQNIQLHMRRHLGIKPFKCDVCQKAFLTKQKLFEHRNIHTGEAPIKCPLCDETFRRHSNLVQHRNRHHLNIKKKVKDYICFCKEVFHSKKKLAWHKEIHDAKPKSCTHCSEKFIHMSSLTRHMRRAHNERFLPNGHKKAENVECPICKGVYLKSSLDVHIRNHSGQRPYACLICNKDFTTKWNLKLHKWTHASRVSKPFKCDQCKGAFIRESDYIAHMNSHKSIRPYTCNHCGAQFIRKYNCQRHVKEHENEKMFNCKVCGKSFHRSYYLKDHMRIHSGLRPYSCHICGKTSTTKSNHNKHVQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481151;
- 90% Identity
- iTF_01481151;
- 80% Identity
- -