Tmad011677.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- -
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000019.1:11607121-11621788[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00094 0.063 13.7 3.1 2 23 177 199 176 199 0.97 2 21 1.3 90 3.8 1.8 1 21 317 337 317 338 0.91 3 21 0.46 31 5.3 5.0 1 23 367 390 367 390 0.92 4 21 0.31 21 5.8 0.1 6 19 401 414 398 417 0.93 5 21 0.051 3.4 8.3 0.3 1 23 423 446 423 446 0.91 6 21 5.3e-06 0.00036 20.8 0.7 2 23 524 545 523 545 0.97 7 21 0.11 7.5 7.2 0.7 1 22 563 583 563 584 0.75 8 21 0.00023 0.015 15.7 0.9 2 23 588 609 587 609 0.97 9 21 2.4e-05 0.0016 18.7 0.8 2 23 640 661 639 661 0.96 10 21 0.021 1.4 9.5 1.7 1 23 684 707 684 707 0.96 11 21 0.0039 0.26 11.8 1.2 2 23 721 742 720 742 0.97 12 21 0.00076 0.051 14.0 8.3 1 21 775 795 775 797 0.95 13 21 0.11 7.7 7.2 3.0 3 23 817 838 817 838 0.93 14 21 0.00014 0.0091 16.4 1.3 1 23 861 883 861 883 0.98 15 21 1.3e-05 0.00087 19.6 0.5 2 23 898 920 897 920 0.95 16 21 0.00032 0.021 15.2 0.1 3 23 938 958 936 958 0.94 17 21 0.24 16 6.1 0.0 1 23 986 1009 986 1009 0.95 18 21 0.011 0.72 10.4 1.6 2 23 1020 1041 1020 1041 0.97 19 21 0.00085 0.057 13.9 0.1 3 23 1055 1076 1053 1076 0.95 20 21 0.00032 0.022 15.2 3.4 1 23 1082 1104 1082 1104 0.99 21 21 0.00027 0.018 15.4 0.4 1 23 1137 1160 1137 1160 0.94
Sequence Information
- Coding Sequence
- ATGGCGGACTCGAGAATGGCTAATTTCATTACGTGCTGCAGACTGTGCTTGTCGGACAGTTTAGACGATCTAAAGTCGGTTTTTGATGAAAGTGTAGACGATCGAGGGTTACAACAGAAGATTTCGGCTTGTTTAGGACTAGAGATAACGGCTGATGATAAACTCTCTACCATGGTCTGCATTCAGTGTATCGAAAAGATCAACAGTTGGCAGTCCTTCAAAGTCACATGTTTCGAGAATCAAACCAAACTAGAACAATGGATGAACGCGTCCAATACCGAATTATCTCTCTCAGATATGAATATTCAAATCAAAGAAGAACCAATCGATAATGATATCCTCACACCGGAAGTCGTCATGAATGGCGAAAACTCCGTCAAAAACGAACCTCTCGAAGAAGAGTACAACGAACTACCACCACCTCTAACCCCCCAAGCTGACGAGATGATAGACATTGAACTCGTCAGCAACTCTCCAACTTCTCAAATCACCAGTAATGATGAGCCAGGTAACACTTACGATCCAAAAAAATGTAGCTTTTGCGGCAAATTATTCAGCTCGTCGGGAAATCGCAAAAAACACGAGAGGAAGATGCATGGGCCTAAAAAAACACATTCGGTTGCACAACCTGACAACGGTTCGTTGAGTCAAGATGAGAGGTCGCAAAGTTCCATTGATTCCCAACCTCAGATTGAATCAACGTCGAAGGAACCAACAAGTGAAGAGAAAAAGATTTTGTTTGCTGCAGGTTTAAAATTGTTGCAGCGAAATTCCACTCCTCCTATATCATTCGAAAATTTGTCTAAAATTGAAAATAGTTACATAGAGAAATGCAAGGCTATGGTCACAATGCACAGCACCCTCAAATGTGCATGTCACAATGTCACTCATCCGAATTTGAAAGGATTGTTATCCCATTTACGTTCTTTACGTATTTGGTTTCCTGTTTTCACTTGTTATCACTGTATGATTACTTTTACGGACAGATCAACCGGTACAAGGCATTATCTCAGATGTCCAAAGTCGAATTTAGAAACTCTGATCAAATTATCAAACTTGAAGAAGCGAAGCGAAGTTAAGACCCGACTTTATCAAAATTACAAATGTACGATATGTCGGTTCATGTACACATTTCATGAAGATTTCTGTACTCACGTTGATGAAGACCACAGTCACATTAACTTACCTTATACTTGCTCCTGTGGGAGAGTTTTCACCTCATTGGAGGATTATAAAGATCATGCTTATATCAGCTGTTTGGTTGAATTCTACTGTGATATTTGTTTTGTTACTCTCAAGACTCTGGATGCGTTCCAAAAACATGCATCTGAGGTTCATGATAATTCGGAAGGTTTTGCTTTACTTCAGGAAGATAATTATAAAAAGAGGAAAAATGTTCCGGGAGTTGTTGCAAAAACAAGACAAAGCGTTAAAAGAGAACATGCAGATGAAAGCAACATAATTTCGGGTAAGAGAAGAGCGTCCTACAAACCTCCAATTATAGAACCTGAAGACGAGGAGGATACTAAAGTACTGAACCCCTTATTTAAACACAAGTTATTAGGGACAGTCTGTCCTATTTGTAATAAAGAATACTCGACTAACAATAATATGTGGAGACACTACAAGACTCACGTTCAGGATAAAAAAGAAGACAAAAAAGAAGAGGAGTTTGATGATTCGATTTATTGTTGCCCTGATTGTGGTGGTATGTTCAGTACTGCCGAATGGGAAAAACACAAAGGGATGCATAAGAAGAAAACTTGTAAAGAGTGTGGGAAAATTTTCCAATTCCAGTCGGAGTTAGACCAACACAGGAGTGTCCACCTTAATTTGAAACTCTACAGAGATTCGAAAACGCAAAATTACAAGAGTACGATGGCCAGTCCCAATAGCGAGCTCAATAATATTGTTATGATGTGTGAAATTTGTGAGAGGATGTTTACATCGAAGGAACAATTGAAAGAACACAAACTGACTCACGAGACTATGCCAGTGTTGGAATCGAACGAACCCACAAATGGCGAGGAGAATAAAACGACGAAGAAATACTGTTGTAAAATCTGTAATAAACAATATGCAGGTTATGGGGGTCTGTGGGATCACAATAGGAAAAAACACCCCGAGAATAAGTCGCCCCAAAGTAACGATTTTCCAAAGAAATGTGAATATTGCGATAAGATTTTCTATACCGGTGGTTCGTATTTCATGCACAAACAAATGCATGAGCGACACAATCAAAAGAAGGCATTGGAAGCGCCTCAGCTTCAACCGTCAACCAATGAGGAGGAGCCGAACGAAGAGGATCCTGAAGAGTCGTACCATACGTGCAAACGTTGTTTTAAGGTTTTCTCAAATCGATACAATCTTAAAAACCACATGAAATGTCACGGGATCAATGCCAACGCTAGTGGTAAAAGTCCCAAAAAAGGAGCAAAGAAAGTCTGGTGTGACATTTGTCACTGTGCTTTTGAAAACACGATGAGTTTGGAGAGGCACAAATCCGAGGATCATGCCGATGATGGAATGCCTACGCTCTCAGACGAGCAAAGTGAAGTCGATTTAAAGGCCCCCTTCGTCTTCACATGTGATGTTTGTGTCCAGACTTTCACAACTAAGATTGCTTTGAAGAAGCATAAAGAGAAGCATGCTCGTGAAGTACGACCGGTAATGAAGAATAAGCCAGTGGTGTATTGCAAGTACTGTAAAATATCGTTTGCGAATCCCTTCCAATTGACCAATCACATGAAGGAGGAACACATGGAGGAGTACAAGCCATACCCGAAGAAAGAGAAGATCAAACAATTCGGGTGTAAGCTGTGTGGGAAAAATTTCAGCTCGGCTGCTGCCTTGTATGCCCATCAAGGTTGGCATAAACGCGGTAAATTCGACAATGAAGACAAACCGGAATCGCCGGTACCTAAAATTAAGGAGGAATCAAAGTCGCAGACTCACTTCGAGTGTCGGACTTGCAACGCTGTTCTTCCCAATGACACAGCTTTGCAAATACATATTTTAGAGAAACATCGTAATGTGAATGCGACGGTACTGCCCGCGAGGTGTACTATGTGCAACTTAGATTTTAGTTCACAAGATGAGTATGACCAGCATAAGCGATTCCATGCGATGGTTGAGAAACAGCCCAAGACGAAAACGTGGGCTTGTACTCAGTGTCCGGCCGGTTTCAGTCGGGCGGATATGTTAAAAATGCATGTTAGGCAATTTCATAAGGAAGTAAAAGAGTACCGGTGCCATCACTGCGACCGAGTGTTTGAAAAAGGGAACTCGTTGAGTATTCATTTGAAGGTTCATGAAAAACAGAAGTTGATTTCGGGAGGGAAAGCATCGCCGGTGCTGGTTAATAAGTCACAAGGTGTACCACCGGTTAAACCAGCCGCGAAGGCTTTATACTCTTGTTCGATTTGTAATAAAAGGTTTGAATTGCCCAAAGATCTGAGGATGCATACCATTCAGGCGCATCCGTTCTGA
- Protein Sequence
- MADSRMANFITCCRLCLSDSLDDLKSVFDESVDDRGLQQKISACLGLEITADDKLSTMVCIQCIEKINSWQSFKVTCFENQTKLEQWMNASNTELSLSDMNIQIKEEPIDNDILTPEVVMNGENSVKNEPLEEEYNELPPPLTPQADEMIDIELVSNSPTSQITSNDEPGNTYDPKKCSFCGKLFSSSGNRKKHERKMHGPKKTHSVAQPDNGSLSQDERSQSSIDSQPQIESTSKEPTSEEKKILFAAGLKLLQRNSTPPISFENLSKIENSYIEKCKAMVTMHSTLKCACHNVTHPNLKGLLSHLRSLRIWFPVFTCYHCMITFTDRSTGTRHYLRCPKSNLETLIKLSNLKKRSEVKTRLYQNYKCTICRFMYTFHEDFCTHVDEDHSHINLPYTCSCGRVFTSLEDYKDHAYISCLVEFYCDICFVTLKTLDAFQKHASEVHDNSEGFALLQEDNYKKRKNVPGVVAKTRQSVKREHADESNIISGKRRASYKPPIIEPEDEEDTKVLNPLFKHKLLGTVCPICNKEYSTNNNMWRHYKTHVQDKKEDKKEEEFDDSIYCCPDCGGMFSTAEWEKHKGMHKKKTCKECGKIFQFQSELDQHRSVHLNLKLYRDSKTQNYKSTMASPNSELNNIVMMCEICERMFTSKEQLKEHKLTHETMPVLESNEPTNGEENKTTKKYCCKICNKQYAGYGGLWDHNRKKHPENKSPQSNDFPKKCEYCDKIFYTGGSYFMHKQMHERHNQKKALEAPQLQPSTNEEEPNEEDPEESYHTCKRCFKVFSNRYNLKNHMKCHGINANASGKSPKKGAKKVWCDICHCAFENTMSLERHKSEDHADDGMPTLSDEQSEVDLKAPFVFTCDVCVQTFTTKIALKKHKEKHAREVRPVMKNKPVVYCKYCKISFANPFQLTNHMKEEHMEEYKPYPKKEKIKQFGCKLCGKNFSSAAALYAHQGWHKRGKFDNEDKPESPVPKIKEESKSQTHFECRTCNAVLPNDTALQIHILEKHRNVNATVLPARCTMCNLDFSSQDEYDQHKRFHAMVEKQPKTKTWACTQCPAGFSRADMLKMHVRQFHKEVKEYRCHHCDRVFEKGNSLSIHLKVHEKQKLISGGKASPVLVNKSQGVPPVKPAAKALYSCSICNKRFELPKDLRMHTIQAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01480307;
- 90% Identity
- -
- 80% Identity
- -