Tcas003001.1
Basic Information
- Insect
- Tribolium castaneum
- Gene Symbol
- -
- Assembly
- GCA_000002335.3
- Location
- NC:5942500-5950473[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00076 0.045 13.8 3.1 2 23 177 199 176 199 0.97 2 21 1.5 89 3.4 1.9 1 20 318 337 318 339 0.90 3 21 0.37 22 5.3 5.0 1 23 368 391 368 391 0.92 4 21 0.25 15 5.8 0.1 6 19 402 415 399 418 0.93 5 21 0.074 4.4 7.5 0.1 1 23 424 447 424 447 0.90 6 21 4.3e-06 0.00025 20.8 0.7 2 23 524 545 523 545 0.97 7 21 0.09 5.3 7.2 0.7 1 22 559 579 559 580 0.75 8 21 0.00018 0.011 15.7 0.9 2 23 584 605 583 605 0.97 9 21 5.6e-06 0.00033 20.5 0.8 2 23 636 657 635 657 0.96 10 21 0.0016 0.096 12.7 0.4 1 23 679 702 679 702 0.97 11 21 0.0016 0.094 12.7 1.1 2 23 716 737 715 737 0.97 12 21 0.00015 0.0088 16.0 8.9 1 23 769 791 769 791 0.98 13 21 0.028 1.7 8.8 2.4 3 23 811 832 811 832 0.93 14 21 0.00011 0.0065 16.4 1.3 1 23 855 877 855 877 0.98 15 21 1.3e-05 0.00077 19.3 0.4 2 23 892 914 891 914 0.95 16 21 1.6e-06 9.5e-05 22.2 0.1 1 23 930 952 930 952 0.95 17 21 0.2 12 6.2 0.0 1 23 980 1003 980 1003 0.95 18 21 0.02 1.2 9.3 1.6 2 23 1014 1035 1014 1035 0.97 19 21 0.0015 0.087 12.8 0.1 3 23 1049 1070 1047 1070 0.94 20 21 0.00026 0.015 15.2 3.4 1 23 1076 1098 1076 1098 0.99 21 21 0.00047 0.028 14.4 0.2 1 23 1122 1145 1122 1145 0.94
Sequence Information
- Coding Sequence
- ATGGCGGACTCGCGGCTGGTTAATTTCATTACGTGCTGCAGACTGTGCTTGTCGGACAGTGTGGACGATCTAAAGTCGGTTTTTGATGAAAGTGTAGACGATCGGGGGTTACAGCAGAAGATTTCGGCCTGTTTGGGAGTGGAGATAACATCCGACGATAAACTCTCCACGATGGTCTGCCTCCAGTGTATCGAAAAAATCAACAATTGGCAGTCCTACAAACTCACATGTTGCGAGAATCAAAACAAACTAGAACAATGGATAAACACGTCCAATCCCGAGCTATCCCTCTCAGACATGAACATCCAAATCAAGGAAGAACCCATCGATAACGACATCCTCACACCGGAAGTCGTCATGAACGGCGAGATCCCCGTCAAAAACGAGCCCATGGAAGAAGAATACAACGAACTCCCGCCACCCCTAACCCCCCAAGCCGATGACATGATCGACGTCGAACTCGTCACAAACTCCCCATCTTCCCTAACCACCGGCACCGATGAGCCAGGTAACGCATACGATCCAAAAAAATGTAGCTTTTGCGGCAAGTTGTTCAGCTCGTCGGGCAACCGCAAGAAACACGAACGGAAAATGCATGGCCCTAGAAAAACCCACTCGGTTACCCAATCCGACAACGGTTCGTTGAGTCAGGACGAGGAGAGGTCGCAAAGCTCGGTCGATTCCCAGCCCCCGAGCGAACCGCCACCGAAGGAACCCACAAGCGAGGAGAAAAAAATCCTGTTTGCTGCAGGTCTTAAACTGCTGCAGCGCAACTCCACCCCGCCCATAGCCTTCGAAAATTTGTCGAAAATTGAAAATAGCTACATCGAGAAATGCAAGGCTATGGTGACCATGCACAACACCCTCAAGTGTGCGTGCCACAACGTCACGCATCCGAACCTGAAGGGGCTGCTGTCCCACTTGCGTTCGCTGCGGATTTGGTTCCCGGTTTTCACTTGTTACCACTGTATGATCACGTTCACGGACAGATCGACGGGCACAAAGCACTATCTCCGGTGTCCAAAGTCGAATTTAGAAACTCTGATTAAATTATCCAATTTGAAGAAGCGGAGCGAAGTCAAGACGCGACTTTACCAGAACTACAAATGCACGATTTGTCGCTTCATGTACACTTTCCACGAGGATTTCTGCACTCATGTTGACGAAGACCACAGCCATATCAGCCTACCGTACACTTGCTCCTGCGGGCGCGTGTTCACCTCCCTGGAGGACTACAAGGACCATGCTTACATCAGCTGTCTGGTCGAGTTCTACTGTGATGTTTGTTTTGTTACTGTTAAGACTTTGGACGCGTTCCAAAAACACGCCGCTGAGGTGCATGACAATTCGGAGGGTTTTGTTCTACTCCAGGAGGATAATTACAAGAGGAGGAAGAGCTCTCCCGGAGCGACGCAGACGAGGCAGAGTGTTAAGCGGGAGCATACGGACGAGCGTAATATTATTTCGGGGAAGAGGAGGACGTCCTACAAGCCCCCGATTATCGACCCTGAGGACGATGAGGACACTAAGGTACTTAACCCGTTGTTCAAGCACAAGTTGGGAGGGACGGTTTGTCCGATCTGCAACAAGGAATACTCGACTAATAACAACATGTGGCGGCACTACAAGACCCACGTTCAGGATAAGAAGGAAGAGGAGTTTGATGACTCGATTTATTGTTGTCCCGACTGTGGCGGGATGTTCAGTACCGCCGAATGGGAGAAGCACAAGGGGATGCACAAGAAGAAAACGTGCAAAGAGTGCGGGAAGATCTTCCAGTTCCAGTCGGAGCTGGACCAGCACAGGAGCGTCCACCTCAATTTGAAACTGTACAGAGACTCGAAAACGCAAAACTACAAGAGCACGATGGCTAGCCCCACCAACGAGCTCAATAACATTGTTATGATGTGCGAGATTTGTGATAGAATGTTCACCTCGAAGGAGCAGTTGAAAGAACACAAACTGACTCACGAGACCATGCCCGTGCTGGAATCGAGCGTGCCCACAAACGGCGAAGAGAACAAAACGAAGAAGTACCGTTGCAAGATCTGTGATAAGCAATATGCAGGTTATGGCGGTCTGTGGGACCACAACAGGAAGAAGCATCCGGACCACAAGTCGCCCCAAAGTCACGAGTTCCCAAAGAAATGCGAATACTGCGATAAGATTTTCTACACGGGTGGTTCGTACTTCATGCATCGACAGATGCATGAGCGGAACAACCAGAAGAAATTGGAAGCGCCGCAGCTCCAACCGGCCACCAATGACGAGGAGCCGAACGAAGAAGACCCCGAAGAGTCCTACCATACGTGCAAACGCTGCTTTAAGGTGTTCTCAAACCGGTGCAACCTCAAGAACCATATGAAGAGTCACGGCATTAGCACCAGCCCCAGCACGAAGAGCCCCAAAAAGGGGGCGAAGAAAGTCTGGTGTGACATTTGCCACTGTGCTTTCGAAAACACAGCAAGCTTGGAGAGACACAAGTCTGAGGACCACGCCGATGATGGAATGCCGGCGCTTTCGGACGACCAAAGCGAAGTCGACTTGAAGACCCCCTTCGTCTTCACGTGCGACGTTTGCGTGCAAACCTTCACCACGAAAATCGCCCTGAAGAAGCACAAGGAGAAGCACGCACGTGAGGTGCGACCCGTGATGAAGAACAAACCGCTGGTGTATTGCAAGTACTGCAAAATATCCTTCGCCAATCCCTTCCAGCTGACCAACCACATGAACGAGGAGCACATGGAGGACTGCAAGCCGCCCCCGAAGAAGGAGAAGACCAAGCAGTTCGTGTGCAAGATCTGCGGCAAGAACTTCACGACGGCCTCCGCCTTGTACGCGCACCAAGGGTGGCACAAGCGCGGCAAATTCGAGAGTGAGGACAAGCCGGAGTCGCCGGTGCCTCGGATTAAGGAGGAACCAAAGACAGAGACGCACTTCGAGTGCCGGACGTGCAACGCAGTGCTGCCGAATGACACGGCGCTGCAGATACATATCCTGGAGAAGCACCGGAATGTGAACGCGACGGTGCTGCCGGCCAGGTGTACGATGTGCAACCTGGATTTCAACTCGCAGGATGAGTACGACCAGCATAAGCGGTTCCATGCCATGGTTGAGAAGCAACCCAAGGCGAAAACCTGGGCTTGTACGCAGTGCCCGGCCGGGTTCAGTCGGGCGGATATGTTGAAGATGCATGTTAAGCAGTTTCATAAGGAGGTGAAGGAGTACCGGTGCCATCACTGTGACCGGGTGTTCGAAAAGGGGAATTCGTTGAGTATTCATTTGAAGGTGCATGAGAAGCAGAAGTTGGTGTCAGGGGGGAAGGCGTCTCCGGTGCCGGTTAGTAAGAGCACGAAGGCTTTGTACTCGTGTTCGATTTGTAATAAAGGGTTTGATTTGCCCAAAGATCTGAGGATGCACACCATACAGGCGCATCCGTTCTGA
- Protein Sequence
- MADSRLVNFITCCRLCLSDSVDDLKSVFDESVDDRGLQQKISACLGVEITSDDKLSTMVCLQCIEKINNWQSYKLTCCENQNKLEQWINTSNPELSLSDMNIQIKEEPIDNDILTPEVVMNGEIPVKNEPMEEEYNELPPPLTPQADDMIDVELVTNSPSSLTTGTDEPGNAYDPKKCSFCGKLFSSSGNRKKHERKMHGPRKTHSVTQSDNGSLSQDEERSQSSVDSQPPSEPPPKEPTSEEKKILFAAGLKLLQRNSTPPIAFENLSKIENSYIEKCKAMVTMHNTLKCACHNVTHPNLKGLLSHLRSLRIWFPVFTCYHCMITFTDRSTGTKHYLRCPKSNLETLIKLSNLKKRSEVKTRLYQNYKCTICRFMYTFHEDFCTHVDEDHSHISLPYTCSCGRVFTSLEDYKDHAYISCLVEFYCDVCFVTVKTLDAFQKHAAEVHDNSEGFVLLQEDNYKRRKSSPGATQTRQSVKREHTDERNIISGKRRTSYKPPIIDPEDDEDTKVLNPLFKHKLGGTVCPICNKEYSTNNNMWRHYKTHVQDKKEEEFDDSIYCCPDCGGMFSTAEWEKHKGMHKKKTCKECGKIFQFQSELDQHRSVHLNLKLYRDSKTQNYKSTMASPTNELNNIVMMCEICDRMFTSKEQLKEHKLTHETMPVLESSVPTNGEENKTKKYRCKICDKQYAGYGGLWDHNRKKHPDHKSPQSHEFPKKCEYCDKIFYTGGSYFMHRQMHERNNQKKLEAPQLQPATNDEEPNEEDPEESYHTCKRCFKVFSNRCNLKNHMKSHGISTSPSTKSPKKGAKKVWCDICHCAFENTASLERHKSEDHADDGMPALSDDQSEVDLKTPFVFTCDVCVQTFTTKIALKKHKEKHAREVRPVMKNKPLVYCKYCKISFANPFQLTNHMNEEHMEDCKPPPKKEKTKQFVCKICGKNFTTASALYAHQGWHKRGKFESEDKPESPVPRIKEEPKTETHFECRTCNAVLPNDTALQIHILEKHRNVNATVLPARCTMCNLDFNSQDEYDQHKRFHAMVEKQPKAKTWACTQCPAGFSRADMLKMHVKQFHKEVKEYRCHHCDRVFEKGNSLSIHLKVHEKQKLVSGGKASPVPVSKSTKALYSCSICNKGFDLPKDLRMHTIQAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481106;
- 90% Identity
- -
- 80% Identity
- -