Tmad012787.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- Hr39
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000007.1:3713344-3726902[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.14 1.2e+03 -1.5 4.1 47 187 207 258 108 320 0.52 2 4 9.1e-09 7.9e-05 22.2 0.1 1 38 392 429 392 457 0.68 3 4 0.01 90 2.2 0.0 55 114 420 480 413 500 0.71 4 4 2.9e-73 2.5e-69 234.6 0.1 205 408 523 721 503 721 0.96
Sequence Information
- Coding Sequence
- ATGGCCGCAGACATGAGGTCTCCGAACGTGTCCGTAACCCCCATCAACATGGAGCCCCCGTATCCATCGACGCCGATTACGAACTGTGATTTGCCAACGGGGGAACCTCAACGCACCAGGAGCGCGCCCCATCCTGGCCTTCTCACCAACGGCGACGTCCTCGACAGTTCCGACGCCGAAGTGGCGCAAATCGACTTCCAATGTGCCGTTAATATGCGACATAAAAAGAAAAGGGATGGGGCGGACGTACCCAGACCCATGTCGTGGGAAGGAGAACTCAGCGATCATGAGAGAGATATGTGTGTCGATGATGATAACGGATCTCAGGTTCCGGAGAATTTGTCGCTGTCGCAACCCAAACTGAACACCATTGTAAACCTCGACTCGAAAGAGAGTCCCATAATGAGGCTAAAACAACCCCCAATGGGCAACTATTCGTTGCACAGCACACCCAGCAACTCTCCCTTGCTCAGCCAGAGACATCCCGTGCCCGGCGTCCCGATCATCGGTCCCAAAGACCTCATACACAAAGACATAATGCACAAGGCGTTGAACGTCCCACCGACGCCTAGTCCCGACTCCGCCATTCATTCAGCGTACAGTGTGTTCAGTTCGCCAAATCAGAGCCCTTTGACGCAAAGACATATCACGTTAACGCCGAATTTGAGTCGGAACAATAGTGATGCCTCGCATTCGAGCTGTTGTAGTTATTCGAGTGTTTCGGTTTCGGTATCGCCCACACAGCAATTCTCACCTACTCACAGTCCTATTCAGGGCCGCCATATGCACAGTATTCACAACAGTCCCCTACATCACAACGTACTCTACCGAAGCCTCCAAGAGGACCCCAGCGTTCAATACACCGACCACGACGGTCTCGACGAGACCGAAGATAAGACTGGCTTAGTTCATACATCTCTGCCCGCACAACCCGGAATATCTCGCCAACAACTCATCAACAGTCCGTGTCCGATATGCGGTGATAAAATTTCAGGATTTCATTATGGAATATTCAGTTGCGAATCGTGCAAAGGCTTTTTCAAACGCACTGTACAAAATCGAAAAAATTACGTCTGTCTAAGGGGGGCCGCCTGTCCCGTCACCGTCGCCACGAGGAAGAAATGTCCGGCGTGCAGGTTCGACAAGTGTCTCCAATGCGGAATGAAGCTAGAAGCTATAAGAGAAGATAGGACCAGAGGGGGCCGTTCGACTTATCAGTGCTCATATTCACTTCCACCGTCGTTAACAAATCATGCCGAACTGAGGGCTAGTTCAACCGATTTAAGACAGAATATGGGTGAAACGCATCACGGTTTAACCGTTAAATTGGAACCAACAGATACAACAGTCTCTCATCACAAAAGGGGAACTTTGCCAGGATCGAGAGGTGTCCCAGCATTATTGCAAGAAATAATGGATGTGGAGCACCTTTGGCACTACAACGAGGTGGAGCTGAACAAGTTGAGCACTGAAGGCCATTTGGGGAAAGAAGGAGGAAGCGGAGCCGTCCACAATCTATCAAACCATCCTCTTTTAGCCGGCACTGCTTTGGCCGGCTCGACTGACACTAATCCAGATTTCGTCGCGAATTTGTGCAATATAGCCGACCGTCGACTGTACAAAATAGTCAAATGGTGCAAAAGTCTGCCACTATTTAAAAACATATCCATCGACGACCAAATCTGTTTGCTCATAAACTCCTGGTGCGAATTGCTGCTTTTCTCTTGTTGTTTTCGTTCAATGTCGACTCCTGGCGAAATTCGAGTCTCTTTAGGAAAAAGCATCACATTGAATCAGGCCAGGGACATGGGAATGCAAGCGTGTATAGAAAGGATGTTGAATTTTACGGAACAGTTGAGAAGGTTGCGAGTGGATCAGTACGAGTATGTGGCAATGAAGGTAATCGTTTTACTAACGTCAGATACGTCTGAGTTGAGAGAGGCTGAAAAAGTTCGAGCTTCGCAAGAAAAAGCTCTCAAAGCGTTGCAAGATTATACGTTGAGCCATTATCCGGACAGTCCTGCCAAATTTGGAGAGTTGCTTCTCCGCATTCCTGAATTACAACGAACTTGCCAGGTGGGGAAGGAGATGTTGACGATCAAATCGAAAGACGGCGACGGCCCAAGCTTCAATTTACTGATGGAGCTTCTCCGAGGGGATCACTAG
- Protein Sequence
- MAADMRSPNVSVTPINMEPPYPSTPITNCDLPTGEPQRTRSAPHPGLLTNGDVLDSSDAEVAQIDFQCAVNMRHKKKRDGADVPRPMSWEGELSDHERDMCVDDDNGSQVPENLSLSQPKLNTIVNLDSKESPIMRLKQPPMGNYSLHSTPSNSPLLSQRHPVPGVPIIGPKDLIHKDIMHKALNVPPTPSPDSAIHSAYSVFSSPNQSPLTQRHITLTPNLSRNNSDASHSSCCSYSSVSVSVSPTQQFSPTHSPIQGRHMHSIHNSPLHHNVLYRSLQEDPSVQYTDHDGLDETEDKTGLVHTSLPAQPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAACPVTVATRKKCPACRFDKCLQCGMKLEAIREDRTRGGRSTYQCSYSLPPSLTNHAELRASSTDLRQNMGETHHGLTVKLEPTDTTVSHHKRGTLPGSRGVPALLQEIMDVEHLWHYNEVELNKLSTEGHLGKEGGSGAVHNLSNHPLLAGTALAGSTDTNPDFVANLCNIADRRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLNQARDMGMQACIERMLNFTEQLRRLRVDQYEYVAMKVIVLLTSDTSELREAEKVRASQEKALKALQDYTLSHYPDSPAKFGELLLRIPELQRTCQVGKEMLTIKSKDGDGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00753059;
- 90% Identity
- iTF_01283426;
- 80% Identity
- iTF_01480918; iTF_01480989; iTF_01480928;