Tmad017401.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- bab2
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000097.1:14812918-14816408[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.9e-17 5.5e-14 51.6 0.0 2 42 354 395 353 398 0.95
Sequence Information
- Coding Sequence
- ATGACAATGCAACAGTATTGCTTGAGATGGAACAACCATCAACCAAACTTCATTTCGGTCTTTTCTAGTCTTCTGAATAGTGAGTCACTTGTTGACGTTACTCTAGCCGCCGAAGGCAGGCATTTGCAAGCACACAAAGTGGTTCTATCCGCGTGCAGTTCATATTTTCAATCTTTGTTCACTATCAATCCTTGCCAACACCCCATTGTGATATTAAAAGATGTTAAATTCACTGATTTGAAAGTTATGGTCGACTTTATGTACTATGGGGAAGTCAATGTCTCGCAAGAGCAACTACCACACATCCTCAAAACCGCTGAAATGTTGAAAATCAAAGGTTTGGCTGAAATCCCCGTCGATCAATCGGTGTCAAAAGCCCAGAATAGTTCAACCGACAAAGCAGAACTCTTGACCCCCGGGGAGACGAATTGGAGCACGGACGGGGCCCCCAGACAGTCTCTATCACCGTCGCCTTGCCCCCTGTCGCCCACCAGTAAACGAAAACGGTTACGAAAATCCTCAACTGGTTCTGGTTCTGGCTCAACTGAACGCACTTCAGATGAACACCAGTCCAGCGAAGTCACTTTGACATCGTCTAGTGGCACTGTTATAAAATCAGACCCGGGGGGCTACGCCTCCGATAGCAGTAGCATTTTACAGAAGAGCAAGGGGCACAGTAGCGACTCCGAGTTGCACAGAGGGAGCTCCCATGAGAGTGTCGAAGGGGAAATCACGCACCAGGTGACGTTGCAAGTCCCACAAGAAGTCAGTGTTCAACACGGATTGGAGACGAGTTCGTGTGAGACAGCGGGGCCCTCTCAACTAACATTAACCGGCATGCAGTGGAACGTGATGGACCACACCGCCTACGCCCAATTCACATCATGTACTTCCCCCACCACTTCCATAACCACGAACCAGACCTACGCCCCGTGTCCCCCAATGGCACAACAACCCATGAATCCCCCATCCCCCAACGCCCAATGCTACCAAAACCAGATAACGAACTCGCCGCCTCAGATGATACAGAAGCGAAAAAGGAGCATCAATCCGCAAGGTGACGAGAATTTCATCAGGGCTTTGGAGGCGGTGAGATTTGGAGGGATTGGATTTTGCAAGGCGGCGAGGTTGTACGGTGTTAATAATCGCACACTGTGGTTGGAGTATAAAAAGAGGGGATATCCCAACTTCCGGTTGAGTATTAAGAACCGGAAACAGGAGAATGCGCAAACGCAAGAGAATAGTCAACAGCAGACGCCACAGAGTCCACAAACGGAAGTGCAACAAGTTGAGAAACAGGAAGAGCAGAATCATCCAGTGGCGTTGATCAGTGGGGCGTTTTTCGATGGGAAACATGTTGATTTAGGGACAGTTTTGCAAAGACCCAAGTATCTAGACGCGGCGGTGATTAATGCCCAACAAGGGGTCAATTTTCAAGGGATTAACTTTGAACAAATGTAA
- Protein Sequence
- MTMQQYCLRWNNHQPNFISVFSSLLNSESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTINPCQHPIVILKDVKFTDLKVMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEIPVDQSVSKAQNSSTDKAELLTPGETNWSTDGAPRQSLSPSPCPLSPTSKRKRLRKSSTGSGSGSTERTSDEHQSSEVTLTSSSGTVIKSDPGGYASDSSSILQKSKGHSSDSELHRGSSHESVEGEITHQVTLQVPQEVSVQHGLETSSCETAGPSQLTLTGMQWNVMDHTAYAQFTSCTSPTTSITTNQTYAPCPPMAQQPMNPPSPNAQCYQNQITNSPPQMIQKRKRSINPQGDENFIRALEAVRFGGIGFCKAARLYGVNNRTLWLEYKKRGYPNFRLSIKNRKQENAQTQENSQQQTPQSPQTEVQQVEKQEEQNHPVALISGAFFDGKHVDLGTVLQRPKYLDAAVINAQQGVNFQGINFEQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852954;
- 90% Identity
- iTF_01480246;
- 80% Identity
- iTF_01481024;