Tcas001125.1
Basic Information
- Insect
- Tribolium castaneum
- Gene Symbol
- -
- Assembly
- GCA_000002335.3
- Location
- NC:2638615-2639593[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7 5.3e+03 -2.8 2.2 59 66 7 14 3 18 0.63 2 3 1.5 4.9e+03 -2.7 0.0 48 55 41 48 37 59 0.61 3 3 1.8e-16 5.5e-13 48.4 6.5 3 70 90 157 88 157 0.96
Sequence Information
- Coding Sequence
- ATGGAGTGTTCAGGATTATGTCGCGTTTGTGGAAACAAAATAGTCTGTAAAGATGGGAACATGTGCACGTTGGGCGAACACCTCCTAAAAAACCACCCCGAAGTGTCGATGACCCACTTTGTTATGGAAAATTGTGAAGACCTATCCAACAGTAAAACAAGCAACAAGAGTAAGCACCGCCGCAGTAATGCGTCCGAGATTTTGAAACGCACCAACAAACGGAACAACAACCTTTACAAAACAACAGTCGAGTCCTGGTGTCCCGGCTCCCGTCCACTCCAGTGTCCGAAGTGTGGGAACACCGACCAACCGTACATAAGAAAACAGAGAAATAAAATCGCCTACAATTCGTTGGGGGCGTTTTTCCTGCTGGGGTGTTGGCCTTTGTGTTTCTTGCCAATGTTGATGTGTGGAGGCACAAATACGATTATCTGTTGTCGAAAATGTGGCTACTGCTTTGGGACTTACGACAAAAAGAAGGGAAAACTCATCCCTTCGACCAAGGATTTCAAAGTGGAAACTCCAAACATCTGCTAG
- Protein Sequence
- MECSGLCRVCGNKIVCKDGNMCTLGEHLLKNHPEVSMTHFVMENCEDLSNSKTSNKSKHRRSNASEILKRTNKRNNNLYKTTVESWCPGSRPLQCPKCGNTDQPYIRKQRNKIAYNSLGAFFLLGCWPLCFLPMLMCGGTNTIICCRKCGYCFGTYDKKKGKLIPSTKDFKVETPNIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481356;
- 90% Identity
- -
- 80% Identity
- -