Tcas012583.1
Basic Information
- Insect
- Tribolium castaneum
- Gene Symbol
- -
- Assembly
- GCA_000002335.3
- Location
- NC:4737813-4741096[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.84 3.5e+03 -2.3 0.0 26 36 119 129 111 139 0.68 2 5 0.058 2.4e+02 1.4 0.0 22 45 145 168 138 175 0.79 3 5 0.00092 3.8 7.2 0.2 22 46 173 197 166 203 0.87 4 5 2.8e-05 0.12 12.1 0.1 21 52 200 231 197 231 0.88 5 5 0.0012 5.1 6.8 0.0 21 48 228 255 226 261 0.89
Sequence Information
- Coding Sequence
- ATGGAAAATGCTCAAGAACGCGATTTTCACAGAAGTTTGGAGCCTGACGTGATCATTAATCATGAACTCAGTGAAGACGAAGAAGAAGTGACTTGCGTGAAGAGCAGGGACGTGCACTCGGCGTCGAATAATGGCCATCCCAAGACGGTGCAACCAGACATATCCATAATTCCGATAAGTAGAAAGCCTCAGATCAAAATAAAGCTGTTCAAGAAGGAGTATTCCCCCTCGAAGGACGACACGAAAGTACAAAGCATCTCTCGATCTCCGCGTCAAACGGTAAGACTGGTATCAAAAGACGAAGCAGAGCGTGCTGGCGACACGTACACCCGACGCAAATCGCTCCCTTTAGAAAAGTGTCACATTTGCAAAAAATTCTTCCGTCGAATGAAAACGCATTTGCTAAAACACGAGCAGACCAATCGAAACCCCAACGATCCACTCACTTGTACGTTTTGCATGAAGGGTTTCAACACTCAGAGCAACTTACTCATCCATATGAGGACTCACACCGGTGATAAGCCTTACGTGTGCGAGGTTTGTCATAAAGGGTTCGCCCAGTCCTGCAATTTGGTCAATCACGTGAGGATACATACGGGGGAAAGACCGTTCAAGTGTCCTCACTGTGACAGGGCGTTTACCCAATCGGGGAATCTCAACAATCATATAAGACTTCATACAGATGAGAAGCCGTTCAAGTGTCATTTTTGCGACAAAGCGTTCGTCCAATCCGGAAATCTCAATTCGCATATTAGAAACAATCACAAGTTTGTTGATGATGGCGCGAATGAGTCTGGTAGTGAAAAAGTAGAAGAATATAAATGCTAG
- Protein Sequence
- MENAQERDFHRSLEPDVIINHELSEDEEEVTCVKSRDVHSASNNGHPKTVQPDISIIPISRKPQIKIKLFKKEYSPSKDDTKVQSISRSPRQTVRLVSKDEAERAGDTYTRRKSLPLEKCHICKKFFRRMKTHLLKHEQTNRNPNDPLTCTFCMKGFNTQSNLLIHMRTHTGDKPYVCEVCHKGFAQSCNLVNHVRIHTGERPFKCPHCDRAFTQSGNLNNHIRLHTDEKPFKCHFCDKAFVQSGNLNSHIRNNHKFVDDGANESGSEKVEEYKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00639814;
- 90% Identity
- iTF_01481200;
- 80% Identity
- iTF_01480397;