Tcas005242.1
Basic Information
- Insect
- Tribolium castaneum
- Gene Symbol
- Zbtb8b
- Assembly
- GCA_000002335.3
- Location
- NC:15419267-15421227[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.32 1.4e+03 -1.0 0.0 23 45 161 183 158 189 0.81 2 9 0.12 5.1e+02 0.4 0.1 26 54 279 307 277 307 0.88 3 9 0.011 44 3.8 0.3 22 54 303 335 295 335 0.84 4 9 0.0041 17 5.1 0.0 23 46 332 355 328 361 0.85 5 9 0.012 49 3.7 0.0 21 48 358 384 354 387 0.87 6 9 0.0061 25 4.6 0.1 23 47 416 440 409 446 0.81 7 9 0.083 3.5e+02 0.9 0.1 21 43 442 464 435 469 0.84 8 9 0.00099 4.1 7.1 0.0 21 52 470 501 464 502 0.86 9 9 0.00089 3.7 7.2 0.0 21 43 498 520 495 524 0.91
Sequence Information
- Coding Sequence
- ATGGAGGAGGAAATCTCCCAAAAAATTTGTCGTGCCTGTTTGACCGAGTCTGGCGAATTCCAGTCGATCTTCGTCCCCGATGAGAAAACCGGCACTTCCATACACATTTCTGAAATGATGATGGCATTCGCTACCGTCCAGGTAACTCTTGGTGACGGTCTCCCGGAACAAATCTGCTCCACGTGCGCCCGCACCACTGTAGATATGTACATGTTCAAGTTAAAGTGCGAAGAATCGGAGAAAATCCTGCGAAGTCGGCTGGCCAAAAGCCCCTTCCAGGAGCAGTTCACCATCGAGGAGAAGCACTACGTGGAGACCAAGGGGGACGTGGACGTTTACAGCATAGTGATCAAGCCTGAGCTGTGCTCCGAAGACTCGGAAATCAACCACGAGCTCAGCTCAGACTTTGAGCATTTGAACGCACCGGATAAAAGTGACAGTGATTTGGACGCGTTTGAGTTGTACGCGGATGAAGGGGGCCAGGAGCACCGGTGTCCCCATTGCCCCAAAGTGTTCGATAAGGAAAGTGCGGCCAATCGCCACATCAAAACACATTCGGCTGTTAAAGCTTACAAGTGTGATACGTGTGATAAGAGATTTTCGCGGAATGATCTTCTATTACGGCACAAAATTGCACATGCGATGAAAATGGACGACCAAAAATTCGAATTGGAAAATTTCAGCGATGATGATGAAGATCCGGATGATGACACGATTATTATTAAAACTGAAACGGCTTTGTATCCATGTGCTGAATGCAATCTCATTTTTATTAAGAAAGAGGAACTTGATGCACACATTCAAAAGCATGAAAAAGGGGGTGGCGAAGGAATTGTTTGTAATGTTTGTATGAAAACGTTCAGCAAACAAGCGCATTTGAATCGACATAAGAAAATTCATTCGCAGAATAAGCCACATGTTTGTCCGACCTGTAATAAGGGATTTGTGAGGGCGGAACAGCTTAATAACCACATGAATATACATTCTGGAATCAAACCGCATGTCTGTGCGATTTGTCTCAAAGGTTTTAACCAAATATCAAATTTGAAAGACCACATGCGAACCCACAACGGTGAAAAGCCCTTTCTTTGTTCCACCTGTGGCAAGGGCTTCAACCAGTTGGGAAACCTTCGTCAACACACCATCCGCCACAGCGGCATTAAAGCCCACCTTTGCAGTACGTGTGGTAACGGTTTCGCCAGCAAAGGTGAACTTTCAGCCCATCTCCGAAAACACACCGGTGCGCGCCCTTTCGTGTGTCCAATCTGTAACCACGGCTTTACAACTTCAAGTTCGTTAACAAAACACAAACGAATCCATTCCGGGGAAAAACCGTACGAGTGTGACGTATGCAAAATGAAGTTTTCGCGGTCGGGGATTCTAGCCAGACATAAAAGGACGCACACGGGAGAGAAACCTTACGTTTGCAAGTTTTGTACAAAAGCATTTTCACAGTCGAATGATCTGACGTCACATTTGCGGATTCACACGGGGGAAAAACCGTACATTTGCGATGTATGTGGACAGGCATTTAGGCAGAGTTCTGCGCTTAAAACTCATAAGAAAACGCATCCTGGACGAGAGGTTATTGACACGAAAATTGGGGTCTTGGGGGTCATGCATACCCCCTTTTTAACGTAA
- Protein Sequence
- MEEEISQKICRACLTESGEFQSIFVPDEKTGTSIHISEMMMAFATVQVTLGDGLPEQICSTCARTTVDMYMFKLKCEESEKILRSRLAKSPFQEQFTIEEKHYVETKGDVDVYSIVIKPELCSEDSEINHELSSDFEHLNAPDKSDSDLDAFELYADEGGQEHRCPHCPKVFDKESAANRHIKTHSAVKAYKCDTCDKRFSRNDLLLRHKIAHAMKMDDQKFELENFSDDDEDPDDDTIIIKTETALYPCAECNLIFIKKEELDAHIQKHEKGGGEGIVCNVCMKTFSKQAHLNRHKKIHSQNKPHVCPTCNKGFVRAEQLNNHMNIHSGIKPHVCAICLKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCPICNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLTSHLRIHTGEKPYICDVCGQAFRQSSALKTHKKTHPGREVIDTKIGVLGVMHTPFLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410169;
- 90% Identity
- iTF_01480302;
- 80% Identity
- iTF_01480302;