Basic Information

Insect: Tribolium castaneum
Gene Symbol: su(Hw)
Assembly: GCA_000002335.3
Location: NC:11522005-11526695[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.2e-05 0.0013 18.6 0.8 1 23 145 168 145 168 0.96

2 13 4.8e-05 0.0028 17.5 1.0 1 23 199 222 199 222 0.96

3 13 5e-07 3e-05 23.8 1.0 1 23 228 250 228 250 0.99

4 13 3.9e-06 0.00023 21.0 0.6 2 20 257 275 256 277 0.95

5 13 1.5e-06 8.7e-05 22.3 1.2 1 23 288 310 288 310 0.97

6 13 6e-05 0.0035 17.2 0.8 1 23 320 342 320 342 0.98

7 13 3e-06 0.00017 21.3 0.3 1 23 348 370 348 370 0.98

8 13 1.1e-05 0.00062 19.6 3.2 1 23 376 398 376 398 0.99

9 13 7.9e-06 0.00047 20.0 3.5 1 23 404 426 404 426 0.95

10 13 3.8e-05 0.0023 17.8 3.4 1 23 432 455 432 455 0.97

11 13 6.5e-06 0.00038 20.3 1.1 2 23 462 483 461 483 0.96

12 13 4.8e-07 2.8e-05 23.8 1.5 1 23 489 511 489 511 0.98

13 13 9.5e-06 0.00056 19.7 3.8 2 23 518 540 517 540 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.2e-05	0.0013	18.6	0.8	1	23	145	168	145	168	0.96
2	13	4.8e-05	0.0028	17.5	1.0	1	23	199	222	199	222	0.96
3	13	5e-07	3e-05	23.8	1.0	1	23	228	250	228	250	0.99
4	13	3.9e-06	0.00023	21.0	0.6	2	20	257	275	256	277	0.95
5	13	1.5e-06	8.7e-05	22.3	1.2	1	23	288	310	288	310	0.97
6	13	6e-05	0.0035	17.2	0.8	1	23	320	342	320	342	0.98
7	13	3e-06	0.00017	21.3	0.3	1	23	348	370	348	370	0.98
8	13	1.1e-05	0.00062	19.6	3.2	1	23	376	398	376	398	0.99
9	13	7.9e-06	0.00047	20.0	3.5	1	23	404	426	404	426	0.95
10	13	3.8e-05	0.0023	17.8	3.4	1	23	432	455	432	455	0.97
11	13	6.5e-06	0.00038	20.3	1.1	2	23	462	483	461	483	0.96
12	13	4.8e-07	2.8e-05	23.8	1.5	1	23	489	511	489	511	0.98
13	13	9.5e-06	0.00056	19.7	3.8	2	23	518	540	517	540	0.94

Sequence Information

Coding Sequence: ATGGAAGAGACGCTAATCATTAAGACGGAAGAGGCGCCTCAGAAGAATGAGGAAACGGTGGTTTTGCAGAACATCCCCATGGAGAGCGAGGAGATTCCCATCGTCTTTGGGGAGCTAATTGAGAATAACTCCGATGGGAATCTCCAGATTAACAGCGTGCAGGAGGAGGATGTTATACACACTTACATCATTCAGGAAGGGGAGTATAGTAACATTGAGTATGAGGAAACCACCATAACCGAAGAGAAGGAAGAGGTGGAGAAGGAGCATGAGGAAGGTGAAGAGAAAGAGGATGAACACTCAGAAGTCGAGCAAGAACTTGACGAATCAAACTCCATGGATTACTCGGAAAGTTACGTTGAACAAACTGAAGAAGCAGAAGATGATCCGGAGGATCACCCCGACTATGCTGACTCCCAAGAATTTGGCGAGTTTGAATGTGATTTGTGTCAACGGAAATTTAAAACTACTGCTGGCCTCAAAAGACACATCACTGTAAATCACGCTGAAGAAGAGGACCTGAAGGACCCTCTAACTTTCCAATTGTGTCCCTGTTGTGGTGAACCAATGGATTCGGCCCACACTATCGGGGACTTTAAATGCGAGAAATGTGACAAACTTTTCGTCCAGCAAAACAGCCTCGATCGCCATTACAGTATTGAGCATTGTGAGGGCAATGCTTACAAGTGTGTAGATTGTAGGAAAGAATTCAAGCAGAAAGAACAGTTGATTGACCACATGAAAGTTCATCCTCTATCCAAGTCGATTAAATGCCCCGATTGTAACCGGGAATTTACGCGCAAGTATCATTTAGACAGGCATATTGACCAGACTGGGTGCAATGGGGCGCCCAAAAAGGCATTTGCTTGTAAGGTTTGTAACAAAGTATTTCATCGCAAAGATAATCTCGCTGATCACTTGAGAGCTCACGCGGGACAAGGGAAGAGGAAGAAACTTTTTATTTGTGAATATTGCCAAAAAGAATTCCACGGCTCTGCTTTACTTAATATTCATGTGAGAACTCACACAGGTGAAAAACCGTATCCTTGCGATTTGTGTCCTAAGAGATTTCCGTCAAGTGGCGCAATGAAGAAACATAGAAGGATGCACACTGGAGAGAGACCATATTCGTGTAAAGAGTGCCATAACAGATTCGCCGCTAAAGAGACCCTCAACCGCCACATGCGCACCCACACCGGCGAAAAGCCGCATTCTTGCCAATTCTGCGGCAAATCCTTCATCCAGGCATCGCAATTGCGTGCCCACATCTTCCACCACACTGGTGAAAACGCGTACACTTGCCCTCACTGTAACCGAGCTTTCAACCGAAAACTACGATTGACAACTCACATTAAATACATGCACGAAGGAGCAGAGCCTTTAACATGCTCGGAATGCGATAAAACCTTTTTCAGAAAGGAGGACTTAGCGCGCCACTTTTTATCACACACTGGAGAGCGACCGTTCGAATGCGACGTCTGCCACAAATCGTTCGCTGTAAAATCCTCGTTGAAAATCCACCAACTGACCCACCGTAAAGAACCCCCGTGTAGTTGCGATACGTGCGGTCGGGCGTTCATTCGCCAGGATTGCCTGATGCGGCATATGCGAGCTCGTCATAGGGACGTTCTTGAGGATATTATGGCGAGTGCAGAGAAGAAGCGGTTGCAGCAACAGTTGTTGAATGCTGCGACGGAAGCCGTGGCTAAGAATCAAGGAAGTTTGACGGAGAATATGGTTTGGAACGAGTTGACTTTAACAGAGTCGATTAAAGAGTTGTTGACGATTCTTGTGGATGAGGCGTGTTTGCAAGATTTTGGATTTCCGGATGCTCCAGTTGATAAGATTTTGGATGCGGTGATTAAAAGATGTGGACACAAGCCGGCCTCTGAGGAAGATTTTGACTACATTGGGCGCATGAGAGAGAACGCCAAGTTGCTGTTCACTGTGGTTATTGACGACGAAGCGGTCAAGTCTTTATTGAATAATCAGACGGTGGATGAAGTGATATTGCACGTCTTGAGGTTAGCAAAGGCTGAGAGTACTTAG
Protein Sequence: MEETLIIKTEEAPQKNEETVVLQNIPMESEEIPIVFGELIENNSDGNLQINSVQEEDVIHTYIIQEGEYSNIEYEETTITEEKEEVEKEHEEGEEKEDEHSEVEQELDESNSMDYSESYVEQTEEAEDDPEDHPDYADSQEFGEFECDLCQRKFKTTAGLKRHITVNHAEEEDLKDPLTFQLCPCCGEPMDSAHTIGDFKCEKCDKLFVQQNSLDRHYSIEHCEGNAYKCVDCRKEFKQKEQLIDHMKVHPLSKSIKCPDCNREFTRKYHLDRHIDQTGCNGAPKKAFACKVCNKVFHRKDNLADHLRAHAGQGKRKKLFICEYCQKEFHGSALLNIHVRTHTGEKPYPCDLCPKRFPSSGAMKKHRRMHTGERPYSCKECHNRFAAKETLNRHMRTHTGEKPHSCQFCGKSFIQASQLRAHIFHHTGENAYTCPHCNRAFNRKLRLTTHIKYMHEGAEPLTCSECDKTFFRKEDLARHFLSHTGERPFECDVCHKSFAVKSSLKIHQLTHRKEPPCSCDTCGRAFIRQDCLMRHMRARHRDVLEDIMASAEKKRLQQQLLNAATEAVAKNQGSLTENMVWNELTLTESIKELLTILVDEACLQDFGFPDAPVDKILDAVIKRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKSLLNNQTVDEVILHVLRLAKAEST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00415305;
90% Identity: iTF_01481089;
80% Identity: -