Trub010787.1
Basic Information
- Insect
- Triatoma rubrofasciata
- Gene Symbol
- -
- Assembly
- None
- Location
- chr10:34783427-34789048[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00057 1.8 8.3 0.2 20 46 5 31 2 37 0.87 2 12 0.0031 9.8 5.9 0.0 21 46 34 59 30 65 0.86 3 12 0.017 55 3.5 0.0 21 46 62 87 58 93 0.84 4 12 0.0079 25 4.6 0.3 21 46 90 115 85 122 0.84 5 12 0.02 62 3.3 0.1 21 44 118 141 107 145 0.82 6 12 0.0039 12 5.6 0.2 18 44 142 169 135 173 0.79 7 12 0.00021 0.68 9.6 0.1 21 46 174 199 170 205 0.86 8 12 0.023 72 3.1 0.1 21 47 202 228 197 234 0.84 9 12 0.034 1.1e+02 2.6 0.1 21 44 288 311 274 314 0.85 10 12 0.00029 0.92 9.2 0.2 21 46 316 341 311 348 0.85 11 12 0.12 3.7e+02 0.8 0.1 21 45 344 368 340 375 0.84 12 12 0.29 9e+02 -0.4 0.0 27 46 406 425 402 431 0.77
Sequence Information
- Coding Sequence
- ATGCGAATTCATTCAAGCGAGAAACCGTATAAATGTACTATGTGCGATTATAGTTGTACACAGTCTGTAGTTTTGGAACGCCATATGCAAACTCATACTGGCGAGAAGCCATATAAATGTAGTGTGTGCGATTACGGTTGTACTCAGTCTGGAGTTTTGGAACGCCATATGCAAAAGCATACAGGCGAGAAGCCATATAAATGTAGTGTGTGCGATTATGGTTGTACTAAGTCTGGAGTTTTGGAACGCCATATGCAAACGCATACAGGCGAGAAGCCGTATAAATGTAGTGTGTGCGACTATTGTTGTACAATATATGGAAATTTGAAACGACATATGCGAACACATACAGGAGAGAAGCCTTATAAATGTAGTGTGTGCGGTTATTGTTCTACAATATATGGAAACTTGAAACGACATATGCGATCTCATAAAAGCGAGAAGCCGCATAAATGTAGTGTGTGCGATTATACTTGTACAGCTTCTGGACAATTGAAGCTACATATGCGGACACATACAGGCGAGAAGCCTTACAGATGTAGTGTGTGCGATTATAGTTTTACACAATCTGCAGATTTGAAACGACACATGCGAACACATACAGGCGAAAAGCCGTATAAATGTAGTGAATGTGATTATAGTTGTACACAATCTGGACATTTGAAACAACATATGCAAACCCATACAGGCGAGAAGCCGTATGAATATAGTGTGTGCGATTATGCTTTGGCAGTATATGGAGATGGGCAGTTGAAACGAGATGTGCCTACACATACAGGCGAGAAGCCGTATAAATGCAGTGAGTGCGATTATACTTGTACAACATCTGGACATATGAAACTACATATGCGGACACATACAGGCGAGAAGCCGTATAAATGTAGTTTATGCGATTATACTTGTACAACTTCTGGACATGTAAAACGACATATGCGGACACATACAGGCGAGAAGCCTTACAGCTGTAGTGTGTGCGATTATAGTTGTGCACAATCTGCAGGTTTGAAACGACATATGCGAACACATACAGGCGAGAAGCCTTATAAATGTAGTGAGTGTGATTATAGTTGTACACAATCTGGACATTTGAAATTACATATGCGAACCCATATAGGCGAGAAGCCATATAAATATAGTGTGTGCGATTATGGTGGGGCAGCATATGGAGATTTGGTACGAGATATGCCAACAAATACAGGCAAGATGTCGTATAAATGTAATGAATGCGATTATGCTTGTGCGCAATCTGGAGATTTCAAGCGACACATGCGCACACATACAGGTGAGAAACCAGTATAA
- Protein Sequence
- MRIHSSEKPYKCTMCDYSCTQSVVLERHMQTHTGEKPYKCSVCDYGCTQSGVLERHMQKHTGEKPYKCSVCDYGCTKSGVLERHMQTHTGEKPYKCSVCDYCCTIYGNLKRHMRTHTGEKPYKCSVCGYCSTIYGNLKRHMRSHKSEKPHKCSVCDYTCTASGQLKLHMRTHTGEKPYRCSVCDYSFTQSADLKRHMRTHTGEKPYKCSECDYSCTQSGHLKQHMQTHTGEKPYEYSVCDYALAVYGDGQLKRDVPTHTGEKPYKCSECDYTCTTSGHMKLHMRTHTGEKPYKCSLCDYTCTTSGHVKRHMRTHTGEKPYSCSVCDYSCAQSAGLKRHMRTHTGEKPYKCSECDYSCTQSGHLKLHMRTHIGEKPYKYSVCDYGGAAYGDLVRDMPTNTGKMSYKCNECDYACAQSGDFKRHMRTHTGEKPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01479588;
- 90% Identity
- iTF_01479588;
- 80% Identity
- iTF_01479588;