Trub004133.1
Basic Information
- Insect
- Triatoma rubrofasciata
- Gene Symbol
- -
- Assembly
- None
- Location
- chr1:88813880-88815106[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.45 1.4e+03 -1.0 0.1 26 48 49 71 45 76 0.65 2 10 0.004 13 5.5 0.1 21 52 72 103 64 105 0.86 3 10 4.5e-05 0.14 11.8 0.2 21 46 128 153 116 160 0.84 4 10 0.00091 2.9 7.6 0.2 21 44 184 207 170 211 0.87 5 10 0.00032 1 9.1 0.2 21 48 212 239 208 243 0.86 6 10 0.00012 0.37 10.4 0.2 21 47 240 266 237 271 0.85 7 10 0.097 3.1e+02 1.1 0.6 21 45 268 292 265 300 0.86 8 10 2.1e-05 0.068 12.8 0.1 21 52 324 355 311 356 0.85 9 10 0.013 42 3.9 0.2 21 46 352 377 349 384 0.85 10 10 0.29 9e+02 -0.4 0.0 21 44 380 403 368 406 0.77
Sequence Information
- Coding Sequence
- ATGACAGTTAATAATCAGAGCGAAGAAACTTTCAGTACATATACTGACGAGGGACTTTATAAATTTGGTGAATTTTTTTATAATTGTTCAACATCTGGAGATACAAAAAAACATATGCGAACATATATAGGCGACAAGGTGTATAACTGTAGTATATGCGGTTATAGTTGTACAAAAACCGATCGTTGGAAAAGACATATGCGAATACATACCGGCGAGAAGCCATATAAATGTAGTGAATGCGATTTCAGAGCTACACAATCTGGAAATTTGAAAACTCATATGCGAATACATACAGGCGAAAAGCCATACAAATGTAGTGAATGCGATTACAGTTGTACAAAAAAAGGAAATTTGAAAATTCATATGCGAACGCATACAGGCGAAAAGCCATACAAATGTAATGTATGCGATTACAGTTGTAGGGAATCTGGAAATTTGAGAAATCATATACGAACACATACTGGAGAAAAGCCGTTTAAATGTAATGAATGCGATTATAGTTGTACAAAAAAAGGAAATTTGAAAATCCATATGCGAACACATACAGGCGAGAAGCCACACAAATGTAATGTATGCGATTACAAATGTAGAGAACCAGGAAATTTGAGAAATCATATGCGAACACATACTGGTGAAAAGCCATACAAATGTAATGAGTGTGATTACAGTTGTAGAGAATCTGGAAATTTAAGAAATCATATGCGAATACACACAGGTGAGAAGCCATACAAGTGTAGTGAATGCGATTACAGTTGTAGAGAATCAAAAAATTTGAGAAATCATATGCTAATGCATAGTGGAGAGAAGCCATATAAATGTTGTGTATGTGATTATAGATGTAGGGAAGCCGGAAGTATGAAACAACATATGCGAACACATACTGGAGAGAGGCCATATAAATGTAATGAATGCGACTACAGTAGCACAAAAAACGGAAATTTGAAAATTCATATGCGAACACATACCGGTGAGAAGCCATTCAAATGTATTGTATGCGATTATACTTGCAGAGAATCAGGAAATTTGAGAAATCATATGCGTATGCATACAGGCGAGAAGCCATATAAATGCAGTGTATGCGATTACAGATGTAGAGAATCAGGAAGAATGAAACAGCATATGCGAACACATACAGGAGAAAAACCATATAAATGTAGTGAATGCGATTATACTTGTGCAAAAAATGGAAATTTGAAAATTCATATGCGGACACATACGGCATGA
- Protein Sequence
- MTVNNQSEETFSTYTDEGLYKFGEFFYNCSTSGDTKKHMRTYIGDKVYNCSICGYSCTKTDRWKRHMRIHTGEKPYKCSECDFRATQSGNLKTHMRIHTGEKPYKCSECDYSCTKKGNLKIHMRTHTGEKPYKCNVCDYSCRESGNLRNHIRTHTGEKPFKCNECDYSCTKKGNLKIHMRTHTGEKPHKCNVCDYKCREPGNLRNHMRTHTGEKPYKCNECDYSCRESGNLRNHMRIHTGEKPYKCSECDYSCRESKNLRNHMLMHSGEKPYKCCVCDYRCREAGSMKQHMRTHTGERPYKCNECDYSSTKNGNLKIHMRTHTGEKPFKCIVCDYTCRESGNLRNHMRMHTGEKPYKCSVCDYRCRESGRMKQHMRTHTGEKPYKCSECDYTCAKNGNLKIHMRTHTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01479591;
- 90% Identity
- iTF_01479591;
- 80% Identity
- iTF_01479591;