Basic Information

Gene Symbol
TRERF1
Assembly
None
Location
chr12:11118039-11190587[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-10 9.4e-08 31.6 0.0 2 43 1124 1165 1123 1168 0.95

Sequence Information

Coding Sequence
ATGAAAACAATGATGCTGAAAATGGTATGGGTGACAAAAGAGTGGGATATTGTAAACGTTAGAGGAAACTGTTTGCTGAAGGGTGGCAAGGGGCAGCCAGGTACTGCGAGCAGCGCTAGTGGACATGCAGTTTACTTGTATGGACCCGCAAGTACGCTCACCACAGAGGAGGAACTGCCTGAAGGAACGTCGTTAGCTATTGCGTACTCCACACCAGATGTATTAGCTGACCCATCCATCGATGTATTACTTGGAGCATCCAACGATGCTGGGGGTTGCCGCACCGTTAGAACTGAACAGGATGTTGATTTAGGGGTTGACTTAATTGGTGGCAGTTCTGGCGCCAGTGGTTTTGAATTGTTTGATTCTCAGAGTGGTCAAGATTTAACGCTTTCACCGCAAACTTTCACCAGCTCGACAGAAGCTTTCATCAATGAAAACTCTAATATTGGCAGTACTGAAGAGGAGAAAGCGGCCGATTCTGGCAAATTAACAGTAAGAAGAGCAACCAGGCCTAAAGCACTATCTCCCAATAGGCAAGGACCACAACAATGTCAGATTTGTTCAAAGGTGTTTGGAAATGCTTCTGCGTTAGCAAAACATAAATTAACGCACAGTGATGAAAGGAAATATGTTTGCGGTATGTGCGGCAAAGCCTTCAAGAGACAGGACCATCTAAATGGTCATATGCTCACGCATCGTAACAAGAAACCTTATGAATGTAAGGCGGACGGCTGTGGAAAATCATATTGCGATGCCAGATCATTACGCCGACATACTGAGAACCATCATGCCAGTAGTTCTCCAGGTGCAGTTCCATCTAGCACTACACCATCACCAGCCGGTACCAGCGGAACTGGAGCAGATTCACCACCAACATGCATCCAATATGCACCAAGACCTACATCACCAAAGGTGAAAAGCACTAAACAAACAACACCTGTTACTACTGGTAGTGTACAGATGCAACAGAATGCTACAAAACAAGTGCAACCTGTCTCACAATTGCAGCAGTTATTGGCCACTGAACCATCACATACTTCCTTATCTTCGAACAATAAGACATCTCCCATCTCAAAAGCTGTTCCAACAAGTAGCAAACCAGTTGAATGCAACTTATGCCATCGTAAATTCAAAAATGTACCTGCATTAAACGGACATATGAGGCTACATGGTGGCTACTTTAAGAAGGAATCTGATTCTAAAAAGTGCGAAAAGAAGGAAGTTAATGGTCCGCCATTGCAGACGGCTAGTATCAGTGTGAGAGCGTTGATTGAGGAAAAGATCATACAGAAGCGGATCACCACCAGCACCGCTCAGGGCTCCCAACACCTGCCACCCACACTGTCCATTATGGAAACGCCTGTTAGAAGATTTGGGAGTAAAACTACAACAGAACCATTAGCTGTTAAAATATCTTCTTTTGTTGTACCTTCATTACCATCGGGAGGTATTAGTACAATTAATTCAGAAAAAGTAGTTATAAAAACTGAAGAAGGAATCAAAGTTGAACATATAAAGGTGGATGGAGGTTTGAAAATGAAATCATTGAAAATAGATAACAGCAAAATGGAAGGTAGTATGCAGACAGAAGTGCCGGTTAAATCAGATTCGGTTCCGGCTACTGTATCATCCATTGTTACAACACCACAACTGGCCACCAGGACTCTACATGACCATCCTATTATTTTAAAAAAAGTATCAAAACCAATAACGAAAAGAACCACATCAGATCCGGGAACAAATCATCAAGAAGTTAATGATGGAGCTCAAGCAATTCAGAACACAATACAGGGAGAAACTTATTCAATAGGTGTTTATAGCGAAGATGGTGGCTACTTTTCACCAACAATTCAGGATGACATGTTTCAACATGTTCAGTCGGTGCAAGAATCAATGCTCTTGCAGGGTGTTGATCCAGCGCAATTAGTTGATTCCATACAGGCTGCAGGTCTTCAGGATATTGGAGCTCTTGAAAATTATCACAGTCCTACTGAAAGTTTGCCAAGTCCGGAAACCTTTCCAAATCACCAAGATTTACAAAGTGTTTTGGACTCACCATTACCAGTCAGTTTAGCCGATTTTGCCTCCCTACCATCACCATCGTTTACCTATCCTACACCACCGGCTAGCCATGAAGGACAGTCACCGTCCTTTCCAAATTTAGTATCTCAAGGTAATGCTTCACCCTTATCAGCTGCTTTCTACACTTCTCCAATGTCAAGTTCGGCCGCTGTGGAAGCTGCCCTCAATGAGGTGTTGCCAGAACACGGGTACCCCTCACCGCCGCCACATTCTCCACTCTCGTCAACTCCGGTCCCATCGCCATTGTCTCTACCAGCTTCATCAACTTCTCCACTTTCCCATCCCAGTTTAACATCACAGATGATGCCAAATTCAGATGATCCATTACTATCTTCAGCGCCTAAAGATTTTGGAGCTAGAAAAAGAGTTGATATTCATGGAGTGAAAGTGGTACATCAAACCACAAATACGGTAACAGGCATGGAAGTGCCGAGTAGTGGTCAAGGCGGTGTTACTGGTATAGTTCTCGATAGAAATGGTGAACTGAAATTAATACAAACTTCATGTTTTCAATCGATTTTAAGTGGGACTGTATTCGTCAACACTAAAACAAAATTAGAACCAACTGTTCTTAGTACAGGTGAAAATGGTCCTAGAGTAGTAAAGACATTGGCTATACCCAGCAAAGCATTGCTCACTAAAACAAAACCAGGAAACGTTGAGACTTCAAAAGAGGATATTGAAGATGACGTTTTCCTGAGCCCAAACGCACCGTCCAGTCCAATAAAGAATAACCGTAAAAGACCTAGATTAGATTGTGCTACTCCGCCGAGCCGACCATATGAGAGTAGGCTGAGAGTGGCTCGCAGCCGGCATTCTTCAGAGAGGCATCTCCTCTTCACACCACCGCCTATACTCCCACCAACACGCCACGGTCAGGGACTTTACTGGCAAGCAGTAACCACTTGGCCATCCTCTACAACCTCTTTGAAGGATTGTGGCTTGGATGATGGTGGACAGGAAATTGGTAGTGCCCCAGAATGTGATACCTCACCTCATATTAATCTTGGTGCACAGTACCAAGTACAAGTACCTCCTTGGAGTCGCCCACACGAGCGAGGTAGAGATACCCCAACAAGGGAACATCTTCTGTGGGATCCAACAACTTCTAAGAACATTAGTGATACAGAAGCCGTTCCTGGAGGAGGTCGCAATAAAGAGTATGCATTACATTTATTACACCTCTGTCATGGCAAAATCCACGACGCAATGCTACGTCTAATGCAACCAACACCATTTCTACCAGTTGGTCATCCACTTCTTAGTTTTGACTATCCCGATAGTGAAAGGTGGAGTCCTAGTGAAATGGATCTATTTCAACAAGCACTTATCAAATATGATAAGGATTTCTTAGCCATTTCACAAGAGATTGGAACAAAATCAACGAAACAATGTGTACAGTTCTATTATATATGGAAGAAGGTTTGTCCAGAAGAATACAAAAGGCTGAGGTTGGTAAGACGTAGATTCAGGGAGGCTGAAAAGGAATCAGAAAGCCTAAAAGCAGAACTTCCTACAAACGATGCAGACCTAGTGTCTACGAGTTCTGAAAGCCGTTTATTCGTTTGCGAATATGCAGATTGTTCAGCTAGCTTCAACTCTAGAGCTGCATTAAACGGCCATATACGTATACATGTTGGTGGTGGAGCCGGAGGTCGTGCTTCCACTCCAGATCATAAGCGACATAATAGTCATAATTCAGCAGGGCTGGATACAATGGAGGAATTTCCCTGCAAGATCTGTGGGAAGATTTTCAATAAAGTGAAAAGTAGAAGCGCACACATGAAGTCACATCGAGCATCAGACACTGAAGCTCGTAAAAGTGCCAAAGTGGAAACTGTGACCAATAATAAAGATTGCAGTACAGAAAGTAATGCGACGGCCAGAGGAGGCCCTACCGTCTCTTCATCTTCTATTGCTCTCCATAGACATCCCTGCGACCGCTGA
Protein Sequence
MKTMMLKMVWVTKEWDIVNVRGNCLLKGGKGQPGTASSASGHAVYLYGPASTLTTEEELPEGTSLAIAYSTPDVLADPSIDVLLGASNDAGGCRTVRTEQDVDLGVDLIGGSSGASGFELFDSQSGQDLTLSPQTFTSSTEAFINENSNIGSTEEEKAADSGKLTVRRATRPKALSPNRQGPQQCQICSKVFGNASALAKHKLTHSDERKYVCGMCGKAFKRQDHLNGHMLTHRNKKPYECKADGCGKSYCDARSLRRHTENHHASSSPGAVPSSTTPSPAGTSGTGADSPPTCIQYAPRPTSPKVKSTKQTTPVTTGSVQMQQNATKQVQPVSQLQQLLATEPSHTSLSSNNKTSPISKAVPTSSKPVECNLCHRKFKNVPALNGHMRLHGGYFKKESDSKKCEKKEVNGPPLQTASISVRALIEEKIIQKRITTSTAQGSQHLPPTLSIMETPVRRFGSKTTTEPLAVKISSFVVPSLPSGGISTINSEKVVIKTEEGIKVEHIKVDGGLKMKSLKIDNSKMEGSMQTEVPVKSDSVPATVSSIVTTPQLATRTLHDHPIILKKVSKPITKRTTSDPGTNHQEVNDGAQAIQNTIQGETYSIGVYSEDGGYFSPTIQDDMFQHVQSVQESMLLQGVDPAQLVDSIQAAGLQDIGALENYHSPTESLPSPETFPNHQDLQSVLDSPLPVSLADFASLPSPSFTYPTPPASHEGQSPSFPNLVSQGNASPLSAAFYTSPMSSSAAVEAALNEVLPEHGYPSPPPHSPLSSTPVPSPLSLPASSTSPLSHPSLTSQMMPNSDDPLLSSAPKDFGARKRVDIHGVKVVHQTTNTVTGMEVPSSGQGGVTGIVLDRNGELKLIQTSCFQSILSGTVFVNTKTKLEPTVLSTGENGPRVVKTLAIPSKALLTKTKPGNVETSKEDIEDDVFLSPNAPSSPIKNNRKRPRLDCATPPSRPYESRLRVARSRHSSERHLLFTPPPILPPTRHGQGLYWQAVTTWPSSTTSLKDCGLDDGGQEIGSAPECDTSPHINLGAQYQVQVPPWSRPHERGRDTPTREHLLWDPTTSKNISDTEAVPGGGRNKEYALHLLHLCHGKIHDAMLRLMQPTPFLPVGHPLLSFDYPDSERWSPSEMDLFQQALIKYDKDFLAISQEIGTKSTKQCVQFYYIWKKVCPEEYKRLRLVRRRFREAEKESESLKAELPTNDADLVSTSSESRLFVCEYADCSASFNSRAALNGHIRIHVGGGAGGRASTPDHKRHNSHNSAGLDTMEEFPCKICGKIFNKVKSRSAHMKSHRASDTEARKSAKVETVTNNKDCSTESNATARGGPTVSSSSIALHRHPCDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01301833;
90% Identity
iTF_01301833;
80% Identity
iTF_01479656;