Trub007555.1
Basic Information
- Insect
- Triatoma rubrofasciata
- Gene Symbol
- Arid2
- Assembly
- None
- Location
- chr12:2161809-2183782[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.37 2.3e+03 -1.2 0.0 15 37 82 104 77 107 0.82 2 2 3.6e-14 2.3e-10 40.4 0.0 2 78 622 700 621 701 0.92
Sequence Information
- Coding Sequence
- ATGGCCCACGTTTTGAACAAAAATCCATTGCGCTATGACAAGGAAAAGGAAAGTTTTTTACGAGAATTACAGCATTTTCATGAAACTAGAGGAACTCCTTCTAGAAGAAGTCCTAAAATTAATGGACACGAAATTGATTTATATCTGCTGTATAATTTAGTAACAAGCCGTGGTGGATGGGTAAAGGTGAACAGTAGGAACGAGTGGGAACAAATATTAATTGAATTCAACATACCTAAACATTGTGTAAATGGAGCAGTAGCCATCAAGCAAATATATCTCAGATATTTGGATCGCTATGAAAAGATGCATTTTCTTGGTGAAATTGGTGAAAGAGGTGGTGATGACGATGAGGATAGCAGGCATAGGCAATCTTTAAGAGATTATAATGGTCTATCTGTGGATCTTTATCGTGAAAGTGAATACGAAAAATTAGCGCTTTCGTTAATTTCACCCCTTCCGAATGAACAAGATTTTGCTATCAACGTTTGTACTGTCCTGTCCAACGAGGGTAAGCATTGTCTCAAACTGGAAAAACATCCAAGAATTCTACACTATTTGATAGCACATGCTGCAGTGTTTAGAGAACCAAAAATTAAGGAACTGTTTCTAGAACTTTATGGTAAAGATCGTGGACATTCAATGCATTCTTTTTGGCGTGACGTTATATCTGACCAAGATATGCTCAAATTGACTGATGGAAACATTAGTGATTCAACTGGTAATACTATAGAGGTTTTAGGCAACAAATCTGATCTTAATACAGAATCATTGGACACAGATTTATTTTGCCTTGGACGATCTTTAGGCACAAATGAATATATTGGACAAAGAGTGATCCAGATTGCAACTATATTAAGAAATCTTTCATTTACTCCAGAAAATGCCCCTTTTATGGCTCGTGATGTCACGTTTATTAGGTTTGCACTGCTATGCTCTTGTTCTAAATGGAACGGTCTGTCCCAAACTGGATGGGATATGTTAAGCAATATTGCTTCAGATTTGCCAGCCAATTCTCCTTTATTGTACGAAATATTGTTACTCACCACTAGAGGTCTTCTTTCAGATGATAGGGGTGTGATAATGAGTTCCCTCGATGTATTAAACAAGCTTGCACAAGCAGATTCGAATGAACATGTTCTTCTTAGTAATTTGAATCAAGAGGTTTTCGATCGAGTGTGCTCTTTCCTTAGTTTACATGACATAATGCTTTTAATATGTACTCTTGAATGTCTCAACGCAATAAGTTCTCTAGGTGAAAAAGCATGCAATTCAATCGTAAGAGTACGCGGTGCAGTAGATGTTCTTGTGTCACTTATAACTGTTGAGGCGCAAAGTTACGGGCCGAAAGCATGCATCCAGATGAGAGTGGTTGAAACAGTAATCGGTAACAGCGGTAATACTACTATAAACACCAGTACCAGCAGTCAGCCAACACTGAACACTCCTGTCACCACATCTGGATTAACCATGCAGACTACAACTGTTGACAAGAGTGTTCTAAGTTCTGGATCTGTTATAGGAACAGTAACTACTATAGTTTCTACTGGAATTTCTACTAACAGTAATAATACTGGAATTTCTACTAATAGCAGTAGTAATACTACTGTTACAACTGTAGCGTCTTATATGCCTTCCAATATAGCAGCAGTTCCTGTTTCTTTTGTGACAACAATACCTGTGCCTAATCTTACACCAGTTACAACTTTTCACCATCATACACCTGTTACAATGCCGACAGTTGTTACAGCAGCATCAGTGACAACTACTACATCACCCACCTGTTCTCACAGAGTTACTGCTAGTACTTCAGCTTCGCTCAATTCTGCGTTGGCTACACAGCAAGTAGCACAAGAAAATGAACAATTTGCTCTAGGTTGGTTGCGAAGCACATTTGAACCTCAGAATGGAGGCAGTATAGAGCAAGCGGAACTCTATAAACAGTATATTAACTATTGTGCTAGCATTGGTCGGCGTGGTGTCATTGCTCCTTTGCACTTTCCTAGATGTGTCAGATCAGTATTTGGAGGAAGTGTGGGACCAAAGGCTGTGACAGTTGGTGATGCAACTCAACATCATTATGAGGGAATTAATGTGAGGAATAAACCGCTTATTCCTAAAAATGCAATTGCAATGCCGAATGTTTTGCCAAATTTGCCATCCACTCCATCGCCAATACTTAAAGCACAGCTTAGTGCACCACCTAAACCGTCTCCTCAAGTAACTCCATTGCCTACAATAGTCACTCAAAGACAAGCCGCACAAGCCCGCTTACTACATCATTCTGCTGGCACTTTACCGATGAATTCTGTAATACGACCGTTAGTGGAAGATAAAACTCTGAATAACAGTATTTCAACAAAATTGCCGACACCAAATTGCAAACTTAATGGATTGAGGCCTGATGTTCCTGAAAAGCAGGAGGAAACTTCAGGAACAAATGTGATAGTAAATTGTGCGGCAAATCATCAAAGTCGGCCACCTCCATTAGCACCATTAAACTCCAATAATAAGCTTCCATCAAAAGGAGTAAGCCAAAGTAGCCAAACTTTGGGAGTAGGTATGGATGAGACAGGCTCCAGTAATACCTCAAGTTCAGGCAATCGTGATAATTGTAGTAGAACAGGTGGTGAAGAAGGTGACAACTCTGTAGGTTCAGGCTCATTAGATGGTTTTCTATTAAATGGTGTCCCGAATGCATTAGATCTAGGAGATACAACAAGCAAAGATTCCACACCGAAAAGCCTAATGCTAGCGGATCTTCTTGAGAAAAATATAGAAAGGCGAGAGCCTCCTTCTCTGAATGGTGCATTACGACTTGTTGAAAGGGGGTTAGAATTGGTTAATGTGGAAGGACAGACAACGGTCGGTCAAATTAATGGAACAGTGACGCTCAATGTTACAACACAGACCAATACTCTTAATAATACAGTTTCTGTTACCAATCAAGATCTGAAAAGGCCGAATATCGTTGCTATGAGTGACATACCTCAAGCGAAGAAAATTCATCTTAACGGTGATATCAAGAATACAGAACCTCCTGAAGAAGGTAGTGTGTCTTCATCAGCAGCCAATCTGTATGCAGCACTTGCAGCTGATGCACTTGAGGATGAACCTGTTGAAGAAGTTGGAGTGAATGTTGCTAGCGTTGCCAGTATACCTACTGGAGCAGGTGCGATAGCAAGTGGAGTTGTACAGGGCCAGGTTGTAATGCAGACCCCATCACCAACTCAGCATACCCGGCAGTTCCTCGTCACCACGGGTGCAGGTCTAACACAGAGGGTTGTTGTTGGTGGACAGCACTATGTAGTTGCTCAGCCTCAGACTACTCTAGTGCAGCATGGTGCTCAAACTGTGCTTTTAGCACAAACGGCTCAACAACAAGGCACTGGTACAAAGACTATTATCATCTTACAACCGCAGAATGTAACCACGGGAAGCACGCCAGCAGGACCGGGCAAAGTTGTGATGCAGAGGATAGGGCAGACTGTTACAGTCAATCACCATGTGCCAACAGTAGTTACCTCAGTTGTCAATACACCACAATCAACTTGTCATCAAAGTTTACCTCAACAAATACATGTATCCCATCATTTGAAAAAGGCAACATCGGCCCCTCCCAGTAACAGTACTGGTGTTGTGGGAAATTCCAGTCTTGGAAATGTTTCAATGCCAGCAATTCCAGCTCCTTGTGCGACTCCAGTGTCAATAATACCTCCTTCGAAAGTATGTGCCACAGCTAGTGTGGTACCAAGCATTGCAAATACTATTGGAACTAATTCAGTGATGACACCATCTCACCATTTTGTCAAGGTGAAGCATGAAAGTCAAGGACATTTTCTATGTGAATGGAGGGGCTGTATGAGGTCCGGCAATGAAGTTTACATGCATGCCTGTGAGACACATTGCCCTCAAGGTAGTCAAGAGATACAATGTTTATGGGAGAGATGTGACGCAATGAAACGAAAAAGATTTTCTCTGATGACACATCTCTACGATAAACACTGCAATGCGGATGTAATGAAAATGATGGCAGTCCGGCGTAAACAACTATCAGTAACCGGACGAAGTGAGATTCCAGCACCAGTTCATGCTACACCACATCCCGGTTATGCTCCCAATGCCGCTTTTCATGCTATCAAAAGACATGCTCTTGAATTTGTTAATCCTAAAGAATTACAGGATGACAATGAAGGTCCTGTTACAAAGAGTATACGATTGACAGCTGCTCTTATATTACGCAACCTAGTCATATATTCTTCAAGTGGGAAAAGGTAG
- Protein Sequence
- MAHVLNKNPLRYDKEKESFLRELQHFHETRGTPSRRSPKINGHEIDLYLLYNLVTSRGGWVKVNSRNEWEQILIEFNIPKHCVNGAVAIKQIYLRYLDRYEKMHFLGEIGERGGDDDEDSRHRQSLRDYNGLSVDLYRESEYEKLALSLISPLPNEQDFAINVCTVLSNEGKHCLKLEKHPRILHYLIAHAAVFREPKIKELFLELYGKDRGHSMHSFWRDVISDQDMLKLTDGNISDSTGNTIEVLGNKSDLNTESLDTDLFCLGRSLGTNEYIGQRVIQIATILRNLSFTPENAPFMARDVTFIRFALLCSCSKWNGLSQTGWDMLSNIASDLPANSPLLYEILLLTTRGLLSDDRGVIMSSLDVLNKLAQADSNEHVLLSNLNQEVFDRVCSFLSLHDIMLLICTLECLNAISSLGEKACNSIVRVRGAVDVLVSLITVEAQSYGPKACIQMRVVETVIGNSGNTTINTSTSSQPTLNTPVTTSGLTMQTTTVDKSVLSSGSVIGTVTTIVSTGISTNSNNTGISTNSSSNTTVTTVASYMPSNIAAVPVSFVTTIPVPNLTPVTTFHHHTPVTMPTVVTAASVTTTTSPTCSHRVTASTSASLNSALATQQVAQENEQFALGWLRSTFEPQNGGSIEQAELYKQYINYCASIGRRGVIAPLHFPRCVRSVFGGSVGPKAVTVGDATQHHYEGINVRNKPLIPKNAIAMPNVLPNLPSTPSPILKAQLSAPPKPSPQVTPLPTIVTQRQAAQARLLHHSAGTLPMNSVIRPLVEDKTLNNSISTKLPTPNCKLNGLRPDVPEKQEETSGTNVIVNCAANHQSRPPPLAPLNSNNKLPSKGVSQSSQTLGVGMDETGSSNTSSSGNRDNCSRTGGEEGDNSVGSGSLDGFLLNGVPNALDLGDTTSKDSTPKSLMLADLLEKNIERREPPSLNGALRLVERGLELVNVEGQTTVGQINGTVTLNVTTQTNTLNNTVSVTNQDLKRPNIVAMSDIPQAKKIHLNGDIKNTEPPEEGSVSSSAANLYAALAADALEDEPVEEVGVNVASVASIPTGAGAIASGVVQGQVVMQTPSPTQHTRQFLVTTGAGLTQRVVVGGQHYVVAQPQTTLVQHGAQTVLLAQTAQQQGTGTKTIIILQPQNVTTGSTPAGPGKVVMQRIGQTVTVNHHVPTVVTSVVNTPQSTCHQSLPQQIHVSHHLKKATSAPPSNSTGVVGNSSLGNVSMPAIPAPCATPVSIIPPSKVCATASVVPSIANTIGTNSVMTPSHHFVKVKHESQGHFLCEWRGCMRSGNEVYMHACETHCPQGSQEIQCLWERCDAMKRKRFSLMTHLYDKHCNADVMKMMAVRRKQLSVTGRSEIPAPVHATPHPGYAPNAAFHAIKRHALEFVNPKELQDDNEGPVTKSIRLTAALILRNLVIYSSSGKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01479223;
- 90% Identity
- iTF_01479223;
- 80% Identity
- iTF_01479223;