Tvap001759.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:74360594-74371677[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-22 4.7e-18 65.1 14.8 3 70 223 290 221 290 0.97 2 2 0.33 2e+03 -1.0 2.9 10 40 607 637 600 659 0.58
Sequence Information
- Coding Sequence
- TTATCAGCAGTAAAGAACAAGAAGAATTATGTAGTTAGTAGTCATCCACTTATGCGTTCTAAGTTAAAATTTATGTACAGAAGGCTTGATCCATGAAGAGTTTAGTTATCTCTATTACGTAGTGCATTGTAATCGAAATCTAATCGCCGCGTTACTCATTTCTGACGTTCAACCACTGAAGCCTGCCGAAAGCCTTCAAGAAATCTATCTCAAGTAGCCAAGGTATTGTGTGCCCATTGTTCTGTGTACTAAAAAAAAAAGAACCTGTAACCTTGTGAAAATCTGTCAAATTTGAGGATCACCCGATTCAATCTCCCAAGTTTATTATTCGCGAATTTTGTGATTGATTGACAGAGGTTTGCCCTCAACTGCAGCATTTAACACATCGAAATGAAAGGAGCAGATTCAAATGAAACTCCAGTGACGGCTATGCCCTCTGCTCCACCGTCCTACAGTGAGGCTGTTGCACATGCTGAGGTACAAGGAAATCCACCAGCACCTGGATTTTATCCACCCCCATACAACCCTCAACCTCCACAGCCTGGTTATCCGTATCCTCAGCCGCAGCCGTACATGGTGCAGCCTAATCCTACATTCATCAGTGTTGTGCAAGGTCCTGCTGGAGTCTCTCGGACAGAAGTGGTGTTCACATCGTTGGGAGCAGGACCAGCTCATGTGAAATGCCCCAACTGTAGTGCCGATATTATTACCAGTACAACCACAGGTCCAAGTTGTCTAGCGCATTTATGTTGTTTTGCCATGTTTCTGACAGGGTTTTGGCTGTGCAGTTGCTTACCTTATTGTATTAGCTCATTCGAATCAACTACTCATCATTGCCCGAACTGCAAAGTGGTTATTGGATCCTATCGCGAAGGTTGTTAATCAAGTGGAAAGCCTAAATGGTCTAAGTTGCCAACTGCGCCTGCAGAGCTGAATGCGCTTAATGCAAATTATTTTTAGAGCATCAAAATAATTCCTCTACCGAAACACATTTCATCCACATTTATATATTTTTACGTGTATTCATGAATTAATGTTTTTATTATTACCATATATTCGCTTAGCATACTTGTTATTATTTACGTTGAATAAAGTCCCAATTTAATGAATACAATTATTCAAACTGTTATTTTTCCCAACCATGGTAAATTTTATGTAAGCTTTTTGTTTCCCCCAGAAATAGCCACTAATATTCAAAGCAAGACATTATTTTTTTTTATATCTGTAAACACATACTTTAAATTGCCAAGTAAATTTATTGGAACAAAGTCAATGGGACCTCATGAGTCGAAGCCAAAATTAAGTTGTGACATTTTTCCTTTTGAGTGAAAAGTACATAATTTTTAGTTGTGAATGTTTCAAATCAGACTAGTTGAAAAGAGGACCACTTCTTGAATTGAATGAATCAGAATTTATCGCAGTTTTCAATAAAGTGCTCGGTTTTGGTCAGAATGCGCGTTTGATTTTCAAATTTCCTACAGTTAATCTTTTGAAATTTGGTGAATAGGAGTAATTAGTGAAAGGTGAAGCCATGCTTGAGTGTGGATGCTTGTTTCAGCTAATTTCGCAATTCTTTTTTGTCTTATATTCGTTGAGGAAATGTGGTATTTGTATGTACTGCCTTCCTTTTAAATCTTATCCTCAACCCTGTGCACCATCTGACTTTGCTTCATATCTAACAGTAGGCTTTTTTATCTCATTTCTTAGGAGCATAATTCTGCTCAAAGAGTGACCTCATAATTTTAGCCATGAATTTTTATTCAACTGGCTCAGAAAAATTCATTAATCAGAAATATTTCACCCAAATACTGCTTATGCTACTGCGCCAAGCTTTCTTCCTCTGCCATTTTTAGTGGTCGGAGATCCATGTTGAACTTTCAGTTCCTCATTTTCTGCATTTTTGTTTGTTTAAGAGGTGCTCTTTTTTCAGACTTATTCCATTTTATTCCTCGCTGTTTTACTTTACTCCAACAAAAAATATAAATAATTATTCTTTCTATTAAGTTCATTATTTTTATGCATCTAAGCATGATCGTCCAATATTTCTTCTTAAGTCTAAACTCATGTGTTTTTTCAATGATTTCAGAATTAACGATAGCTCAAAATAAGTCCGAATTTACATAGGATGAGGAGAACAGCAGAAATTGATGAATTATTGTGTCGGAGTATGATTCACTCGAGATGTGAAAGTTGAGTCAACCTATAATCTTTGGCAAAATTGGAAAATTTATGTATTTAAAATTTTGAAGTAAAACAAAGGTGATTTGAATTTTTGTTTTTTTCGCATCGAAATTTTCTTTGGTGTTAGAAAGAACGTAAACTTTCAATTGGTACCAAAGATTATAGATGAACTGGCTGGTTTTGTACTTCTAGCGGAAAAGATAAAACGTAAATTGATTAGGCATTACTTTTGGTTTAATAGTGCTGTGTGACACTTCAAAGCTGATACTAGTTAAAGGATTATGAACAATCAACTGGTGTCTGAGTTTTGTCTCCTTTACTGTCAATCATGATTTTATTTGAACTTATATAGTAAATTTATATCTGTTGCCTTGTTTTAAGTCAGCTTTAAGAATTTATTCAGTCTGCTAGTCTCCTCATCTGAACTAACTGCAAGCTCTAGATTTTTAGCTACGCAGGTGTCCTCTTTTCCATCAGTTATCATTAAGTGCAATTTTTTTAAATGGGCATCATTTCAGTCTATTTTGACTCCATCTTTATTCCTCTAAGTTATCTTCTAGCAAAGGAAGTCCACCTTATAGATTTAGTCCTAATAGAATTTACTCTTTGCCTCACCACTCTTGTTACTATATACTAGTTAAATGCCTGTAAGAATTTCAGTGTATTTTTGAAATTCATGATTTTTGGACCTAAGATATCTTGGGATTTTGGGTCCTTTTTCCTTGGACA
- Protein Sequence
- LSAVKNKKNYVVSSHPLMRSKLKFMYRRLDP*RV*LSLLRSAL*SKSNRRVTHF*RSTTEACRKPSRNLSQVAKVLCAHCSVY*KKKNL*PCENLSNLRITRFNLPSLLFANFVID*QRFALNCSI*HIEMKGADSNETPVTAMPSAPPSYSEAVAHAEVQGNPPAPGFYPPPYNPQPPQPGYPYPQPQPYMVQPNPTFISVVQGPAGVSRTEVVFTSLGAGPAHVKCPNCSADIITSTTTGPSCLAHLCCFAMFLTGFWLCSCLPYCISSFESTTHHCPNCKVVIGSYREGC*SSGKPKWSKLPTAPAELNALNANYF*SIKIIPLPKHISSTFIYFYVYS*INVFIITIYSLSILVIIYVE*SPNLMNTIIQTVIFPNHGKFYVSFLFPPEIATNIQSKTLFFFISVNTYFKLPSKFIGTKSMGPHESKPKLSCDIFPFE*KVHNF*L*MFQIRLVEKRTTS*IE*IRIYRSFQ*SARFWSECAFDFQISYS*SFEIW*IGVISER*SHA*VWMLVSANFAILFCLIFVEEMWYLYVLPSF*ILSSTLCTI*LCFISNSRLFYLIS*EHNSAQRVTS*F*P*IFIQLAQKNSLIRNISPKYCLCYCAKLSSSAIFSGRRSMLNFQFLIFCIFVCLRGALFSDLFHFIPRCFTLLQQKI*IIILSIKFIIFMHLSMIVQYFFLSLNSCVFSMISELTIAQNKSEFT*DEENSRN**IIVSEYDSLEM*KLSQPIIFGKIGKFMYLKF*SKTKVI*IFVFFASKFSLVLERT*TFNWYQRL*MNWLVLYF*RKR*NVN*LGITFGLIVLCDTSKLILVKGL*TINWCLSFVSFTVNHDFI*TYIVNLYLLPCFKSALRIYSVC*SPHLN*LQALDF*LRRCPLFHQLSLSAIFLNGHHFSLF*LHLYSSKLSSSKGSPPYRFSPNRIYSLPHHSCYYILVKCL*EFQCIFEIHDFWT*DILGFWVLFPWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -