Tvap001068.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:47368332-47376490[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.25 5.6e+02 0.8 0.0 25 44 210 229 202 235 0.83 2 6 0.018 41 4.4 0.0 22 47 235 260 230 265 0.87 3 6 0.12 2.8e+02 1.7 0.0 22 44 263 285 260 293 0.86 4 6 0.093 2.1e+02 2.1 0.0 22 46 291 315 286 322 0.86 5 6 0.069 1.6e+02 2.6 0.0 26 45 323 342 319 346 0.89 6 6 0.00097 2.2 8.5 0.0 18 44 343 369 341 376 0.86
Sequence Information
- Coding Sequence
- GTTCCTTTCATCTTAGTTTCATTCATTAAAGTAGTTTAATACCCCAACTTATTCATCTTACCAATTACCATGTTTCAACTGAAAGGGAAAAGTGGGCATGAAGTTCCTTTCTGGTAAATCAGCGGAGAGTAGCTTCATGCTTTTCGATTAGCCGAGGGATGCGTTAACGAAACCAGCCCTTATTTGGCTTAGCTTTTCTTTGAACCGAAGGCATTTATATCCAGCTTTATCTTGGATCCCAACGTAGAATTCAATCTTAGATTGATAAAAGCAATGGAGCCTAATCAGACAAGAATTCTCCATGTTGAGGGTCCCTCTGGGGAGCCTCTTCAATCGGTAACGATTAGTGAATTGCAGCCAGTTCCAGTCGACACCGGCAGACCAATTGTGGTGGATGTTGTCGAAGGGCAGAAAGATATGTCGAACATAGTTAAACTGGAAAGAACAGACAAAGAATGTCAGACTGACCCTGATGTGTACCTACTGGCAGCAGCGTCGAAAAGAGGAGAAATCCCCATTCATCGGTTGCCTCAGGAAGGTCAAGCCGTGAATGGGAAAAATGACCCTTACAACTACACCCTGTGGAATGCTGCACAGCAGCACTTCAATCAACAATTGAACAAGAGGTTTAGCTGCACTCTATGCGATAAGACTTTTACACAGCAAGGTAATTTAAAAACTCACATGATGTCTCACTATTGCGAAAGGAACTTCAGCTGTCCTTATTGTGAAAAAACATTTGTTCAAAAAGGAAACTTGAAAACTCATATCATGCTTCACACGAAAGAAAAAGTACACGCGTGTGAATTTTGCGATAAGGTTTTTGTTCAGAAAGGGAATTTGCAAAGTCACATGTTAACACACACAAAAGAGAAGAAGTACCACTGTCTCATTTGCACAAAGTCATTTACCCAAAAAGGCAACTTAAAGACCCATTTCCAGATTCATACAGGTATGAAAAGGTTCTCGTGCCCGTACTGTGAGAAAGCTTTCAGCCAAAAAGGAAATCTTAAAACTCATATTGCCAGGCACACCGGGGAGAAGAAATTCCAGTGCCCCATTTGTGATAAAATGTTTGTACAGAAAAATAATTTAGATAAGCATATGATGAACCACTCTATACATAAAAATGTTGATGAGCAATATATCGCCAGGAGTTACAACCCTCAACAGCCTCCTCAAATTAGCCAGCAAGCACTAATGGAGCCTCCGAAATCAGAGCCCTCGAATATAGAAACGTTTTATAGCTACGTCGGTAAATTGTATAATCCAAATCCTCAAGTTCATCTAGGCAACTAAAAGCTATGAGCTTTTCCTCTTTAGAAATTATTTGCATGAATAAGAAAGGGAATACCTAATAAAAAATTTAATTAAGCTGAGAATTCTCTCTTTGGTTTATGTGACTGTGATAAGTCATTTTGGTGATAAGAGATTATATTTTCTCAAATGGAATGTTTTGATTTGAATCAGGACAATGTTTGGATTTTCAAAATCAATTTTTTTTGTTCTTCTTCTCTGTGTTTTTCCTTGATTGGTGATCTTGTATATTCTCTCACGATTCGTTGCATAAATTGTGTCCTTTGTCTTCTTTTCAATTGTCAAAAATTATTCCGAAGTCCTGCAGTGTCTCGCAAACATTTTCAGCGATTCCTTCAGCACTAACCGTAGAATAGATAATTATTGCTTTTTTTTTCTTGATAATTCGTCAGCTTTCATCTATGAGATATTCATCTGCGCATTTCGGTTTTTGTGACATCTGACTACAACCATTAAAAAAGCTTTAATAGTTTTGTTTCCGTGGTTTAGAAATCGTCCTCGCACTTTCATGTATTGGCCAGGGGAGTTTTAGAGCCGGAGGATAATGGTATTCGTGGCTCTGACCTTTTTCTCGCCGGCTAATGTTTTAAACATTTTTCGTTTCTCTCTTGCCCCTTTTTAATTCTCAGTCCAGTCATTTACTGTGAAACACAAGC
- Protein Sequence
- VPFILVSFIKVV*YPNLFILPITMFQLKGKSGHEVPFW*ISGE*LHAFRLAEGCVNETSPYLA*LFFEPKAFISSFILDPNVEFNLRLIKAMEPNQTRILHVEGPSGEPLQSVTISELQPVPVDTGRPIVVDVVEGQKDMSNIVKLERTDKECQTDPDVYLLAAASKRGEIPIHRLPQEGQAVNGKNDPYNYTLWNAAQQHFNQQLNKRFSCTLCDKTFTQQGNLKTHMMSHYCERNFSCPYCEKTFVQKGNLKTHIMLHTKEKVHACEFCDKVFVQKGNLQSHMLTHTKEKKYHCLICTKSFTQKGNLKTHFQIHTGMKRFSCPYCEKAFSQKGNLKTHIARHTGEKKFQCPICDKMFVQKNNLDKHMMNHSIHKNVDEQYIARSYNPQQPPQISQQALMEPPKSEPSNIETFYSYVGKLYNPNPQVHLGN*KL*AFPL*KLFA*IRKGIPNKKFN*AENSLFGLCDCDKSFW**EIIFSQMECFDLNQDNVWIFKINFFCSSSLCFSLIGDLVYSLTIRCINCVLCLLFNCQKLFRSPAVSRKHFQRFLQH*P*NR*LLLFFS**FVSFHL*DIHLRISVFVTSDYNH*KSFNSFVSVV*KSSSHFHVLARGVLEPEDNGIRGSDLFLAG*CFKHFSFLSCPFLILSPVIYCETQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01478379;
- 90% Identity
- iTF_01478379;
- 80% Identity
- iTF_01478379;