Tvap012305.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- mecom-a_3
- Assembly
- GCA_011764245.1
- Location
- HIC:53376942-53377796[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0047 11 6.3 0.0 21 45 104 128 97 132 0.86 2 3 0.0014 3.3 7.9 0.5 21 45 132 156 128 161 0.89 3 3 2.3e-05 0.052 13.7 0.1 20 45 160 185 155 188 0.89
Sequence Information
- Coding Sequence
- ATGGCATGTCCCAAACCCAAATATCCCATGGTTCTTGACGGCCTGTATCGAACTCCGTTCAACAAACTAAATTTGTTGCCTCATTATGATTCAATCAGCAATCAGGAACGGTTTCTTCCACACTTACCCTCACCGTTCGGCCCACCTAAACCATACCATATTCTCAACTCGTATGTCAATAGTCTAAACGGACAAGGTATAAATCGGCCAAATTTTGAACATTTAATAGAATATCCCAACAATTTTGGATCGAGTAAACCATATCAAGAAATCTTGAGCCAAATTCCTAGCAACGGGCCTGCCAACAAGTCCAAAGACAAATATGCTTGCAAGTTCTGTGGTAAGATTTTCCCGCGCTCAGCGAACTTAACGAGGCATCTGCGAACCCACACTGGTGAGCAACCATACAAATGTAAATATTGCGAGAGGTCCTTCAGTATCTCGTCAAATCTTCAGCGACACGTCAGAAACATCCATAACAAAGAGAAGCCGTTCAAATGTCCGTTGTGTGATCGGTGTTTTGGTCAGCAGACGAATCTTGACCGTCATCTAAAGAAACACGAGGAGGACGATGAAAGCTGTGTCGTAGCCGTGGCCGACAGTCCGGGAAGTAGCAACGAAAATGAGCGAGATGATGCTTGTTTTGACGAGATACGGAATTTCATGGGTAAGGTCACCTACTCGGGCCCTGATCCGTATATTAACCCTATGCAGGCCGCAATGTACCCCTCTGTCACCAATGAAGATATCGATGAGAAGATAACGAAGGCGAGGGCGATGCCGAGATCGAGGAGGATATTTCAGACGTTGGATCACCTCGAGACTCGTCTATTCACGATTCTCCTTCACCGCTGA
- Protein Sequence
- MACPKPKYPMVLDGLYRTPFNKLNLLPHYDSISNQERFLPHLPSPFGPPKPYHILNSYVNSLNGQGINRPNFEHLIEYPNNFGSSKPYQEILSQIPSNGPANKSKDKYACKFCGKIFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEEDDESCVVAVADSPGSSNENERDDACFDEIRNFMGKVTYSGPDPYINPMQAAMYPSVTNEDIDEKITKARAMPRSRRIFQTLDHLETRLFTILLHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01478298; iTF_01478432;
- 90% Identity
- iTF_01478298; iTF_01478432;
- 80% Identity
- iTF_01478298; iTF_01478432;