Tvap014424.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:44236048-44239333[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 6.5 1.5e+04 -3.8 0.0 30 48 297 315 280 316 0.73 2 8 0.0034 7.7 6.8 0.1 22 46 399 423 390 429 0.88 3 8 0.024 54 4.0 0.0 22 44 454 476 448 480 0.88 4 8 0.039 88 3.4 0.1 20 48 480 508 476 512 0.88 5 8 0.0013 3 8.1 0.0 16 45 563 592 559 599 0.87 6 8 0.0041 9.3 6.5 0.1 21 48 596 623 592 628 0.90 7 8 0.00045 1 9.5 0.3 16 49 620 653 607 658 0.91 8 8 0.14 3.3e+02 1.5 0.0 16 43 649 676 647 677 0.88
Sequence Information
- Coding Sequence
- ATGGAAGGTGATGATTCAGTTCCATTTAAACAAACAGGTGATCCTGATTCAATGAAAGAGCTAATAAAAGTAAAAAAGGAACTTCAGAGGAATGAAAATTATCCTATTCTTAATTACTCAGTGCCTATCAAAGATCAACCTCCCGCAGTTCCATCATTTGAATTGATAACTAACCTAAAAACAGAAAATACTATTGGAGACATATTCAGCTCAGAGTCACTCAATCATTCAACGGAAGACAGGATATCCTCTAAACACATAGTTTTTAACGGTGGGCAAGCTGTCAAAGACCACACTGTGACCACAAAGGAAGAAGATGTGGAAGCCTGGTTCGGCAAGAAGCAGAAAATTATTTTAGAAAGAGTGGATAGGGTGAAAAAGGAAGTCACTAGTAAAGAGATAAGACTTGAATCTGAACAGCACAGTGAAGAATTTTACAGTCATAAAAGTCATCATGAAACTGCAAAAGTGAGTTCAGAGACCCAATTCAATGACATTTTAATTGATGAAATGATCAAAAAAGAGAATCATTGCACATATGAAGAAGACCTCAGGGGAATGTCTGAATTCAACCATGAAATTTTGGATACTTCAACTGATTTGGATGAAACGGATGTTAAAGATATTGAACTAAGCAATGTTCAGTTCATACCTACAGTTGTAAAATCAGAAGCAGATTGGCACGATGAAGAAACTTTGCTTCAGTCACTTGGTGGTAGCTCCAATGATCCATCTACCAAACAATTGGAGCATGTCCCTCATGATGAGATAAAAAAGATGGATGTCAAAAAGGTATCACATATTGCAATCACCCAAAGCTGTTCAGAAGAACAAGCAGAAAAGACCAGTATTACATCTGAGAATGAAATGAAGGATCAGACAGAGGTCAAGTGGAAAAGTGTGCGAAAATCAAAAAACAAAGAACATGAAAAGGAAATTCAACATAATTTTTCTGCTTCTTCCTTAAAATTATTGGAAAGAAAAAATTTAAAATATCCTTCAATCACGGAATTCAGACATAAACCGGAAAATATCTTGGTGCTCGCAGAATGTCAAGTCAAAGTGCCTTCTAAGGATAGATTAAACAACTATCCAAAGCATAAGGCTCATCTGAAGCATCATGAATGCTCTCACTGCAATAAAATTTTTTCTAACAAAACTGATTTGATACGTCATATCAGAACACATACTGGTGATAAACCATTTACATGCACAAACTGCCATGCGAAATTTGCTCATAAAAAAACTTTAAAACGTCACATCAGTATACATACTGCAATGAAAAATTGCTGCTCTCACTGCAATAAAAATGTTTGTAACTATACTGATTTGATACGTCATATCAGAACACATACTGGTGATAAACCATTTATGTGCACAATCTGCCATGCGAAATTTACTCATAAATCACTTTTAAAACGTCATATCAGTACGCATACTGGGGAAAAACCTTTTGAATGTACTCTCTGCAATGCAAAATTTGCTCGGAAAGAACGTTTAAATTATCATATCAAAAGCAGACATACTGGTGAAAAACTTTATGAATGCTCTCACTGCAATGCAAAATTTGTTACGAAAGGACATTTAAACAATCATAACAAAAGCAGACATACTGGTGAAAAACTTTATGAATGCTCTCACTGCAATGCAAAATTTGTTACGAAAGGACATTTAAACAATCATATCAAAAGCAGACATACTGCTGATAAACCATTTATATGCACAATCTGCCATGCAAAATTTACTTTTAAAACACTTTTAAAACGTCATATCAGTACGCATACTGGGGAAAAACCTTTTGAATGTACTCTCTGCAATGCAAAATTTGCTCGGAAAGAAAATTTAAATCTTCATATCAAAAGCAGACATAGTAGGGAAAAACCTTTTGAATGTGCTCTCTGCAATGCAAAATTTGCTCAGAAAGGACATTTAAATTATCATATCAAAAGCAGACATAGTGGGGAAAAACCTTTTGAATGCTCTCACTGCAATGCAAAATTTGTCTCGAAAGGAGATTTGAAAAAACATATGATATAAGAACACACACTGGGGAAAAACCATTTGAATGCACTATTTGCAATGCAAACTTTGCTCGGACAGGAAATTTGAAAGTTCATATAAGATCACACTCTGGGGAAAAGCCTTTTGAATGCGCTGACTGCAATGCAAAATTTACTACAAAAACCAGTTGGATAGTTCATACCAGAACACATACTGGTGATAAACCATTTATATGCACAATCTGCCATGCAAAATTTACTCTTAAAATACTTTTAAAACGTCATATCAGTACGCATACTGGGGAAAAACCTTTTGAATGTACTCTCTGCAATGCAAAATTTGCTCGGAAAGAACAGTTAAATCTTCATATCATAAGCAGACATACTGGGGAAAAACATTTTGAATGTGCTCTCTGCAATGCCAAATTTGCTCATAAAGGACATTTAAATTATCATATCAAAAGCAGACATAGTAAGGAAAAACCTTTTGAATGCTCTCACTGCAATGCAAAATTTGTCTCGAAAGGAGATTTGAAAAAACATATAAGAACACACACTGGGGAAAAACCATTTGAATGCACTATTTGCAATGCAAAATTTGCTCAGACAGAAACTTTGAAAGTTCATATAAGATCACATACTGGGGATAATCTTTTTGATTGTGCTTACTGCACTGCAAAATTTACTATAAAAACCAATTGGATAGTTCATACCAGAACACATACTGGGGAAAAACCATTTGAATGCGCTGAGTGCAATGCAAAATTTGCTCAGAAAAACCAACTTAAAATGCATACCAGAACACATACTGGTGAAAAGCCATTTAGTTGCTCTGACTGTAACGCAAAATTTGCCCGAAAATGCGTTTTGAAACTTCATATCAGAAGAAGACATACCGGAGAAAAACCTTTTGAATGTACGCTTTGCATTGCTAAATTTGCTTCGAAAACCTGTTTGAGTTCTCACATTACAACACATAGTGGTGTAAAACCCTTTAAGTGCAGTGACTGCCCTGCAAAATTTGCCAAGAAAATTCAACTGACAAGCCATATCTTGAGACATAGTGGGGAAAAACCTTTTGAATGTGATCGCTGTACTGCTAAATTTATCTTTAAAAGTAGTCTGAAACAGCATGCCAGAACTCATACTGGTGAAAAGCCATTTAGATGTGCTGACTGCAATGCAAAATTTACTCTGAATTACAGTTTGAAACGTCATATCCTAACTCACAGAGGGGAAAAACCCTTTGAGTGCGCTGACTGCCATGCAAAATTTACTCACCCTAG
- Protein Sequence
- MEGDDSVPFKQTGDPDSMKELIKVKKELQRNENYPILNYSVPIKDQPPAVPSFELITNLKTENTIGDIFSSESLNHSTEDRISSKHIVFNGGQAVKDHTVTTKEEDVEAWFGKKQKIILERVDRVKKEVTSKEIRLESEQHSEEFYSHKSHHETAKVSSETQFNDILIDEMIKKENHCTYEEDLRGMSEFNHEILDTSTDLDETDVKDIELSNVQFIPTVVKSEADWHDEETLLQSLGGSSNDPSTKQLEHVPHDEIKKMDVKKVSHIAITQSCSEEQAEKTSITSENEMKDQTEVKWKSVRKSKNKEHEKEIQHNFSASSLKLLERKNLKYPSITEFRHKPENILVLAECQVKVPSKDRLNNYPKHKAHLKHHECSHCNKIFSNKTDLIRHIRTHTGDKPFTCTNCHAKFAHKKTLKRHISIHTAMKNCCSHCNKNVCNYTDLIRHIRTHTGDKPFMCTICHAKFTHKSLLKRHISTHTGEKPFECTLCNAKFARKERLNYHIKSRHTGEKLYECSHCNAKFVTKGHLNNHNKSRHTGEKLYECSHCNAKFVTKGHLNNHIKSRHTADKPFICTICHAKFTFKTLLKRHISTHTGEKPFECTLCNAKFARKENLNLHIKSRHSREKPFECALCNAKFAQKGHLNYHIKSRHSGEKPFECSHCNAKFVSKGDLKKHMI*EHTLGKNHLNALFAMQTLLGQEI*KFI*DHTLGKSLLNALTAMQNLLQKPVG*FIPEHILVINHLYAQSAMQNLLLKYF*NVISVRILGKNLLNVLSAMQNLLGKNS*IFIS*ADILGKNILNVLSAMPNLLIKDI*IIISKADIVRKNLLNALTAMQNLSRKEI*KNI*EHTLGKNHLNALFAMQNLLRQKL*KFI*DHILGIIFLIVLTALQNLL*KPIG*FIPEHILGKNHLNALSAMQNLLRKTNLKCIPEHILVKSHLVALTVTQNLPENAF*NFISEEDIPEKNLLNVRFALLNLLRKPV*VLTLQHIVV*NPLSAVTALQNLPRKFN*QAIS*DIVGKNLLNVIAVLLNLSLKVV*NSMPELILVKSHLDVLTAMQNLL*ITV*NVIS*LTEGKNPLSALTAMQNLLTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01478373;
- 90% Identity
- iTF_01478373;
- 80% Identity
- iTF_01478373;