Basic Information

Insect: Trialeurodes vaporariorum
Gene Symbol: Trl
Assembly: GCA_011764245.1
Location: HIC:36894178-36911409[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.8e-11 4.1e-08 33.3 0.4 18 44 226 252 217 255 0.90

2 3 5.4e-12 1.2e-08 34.9 0.0 21 49 285 313 273 317 0.91

3 3 6 1.4e+04 -3.6 1.0 16 29 383 396 376 405 0.65

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.8e-11	4.1e-08	33.3	0.4	18	44	226	252	217	255	0.90
2	3	5.4e-12	1.2e-08	34.9	0.0	21	49	285	313	273	317	0.91
3	3	6	1.4e+04	-3.6	1.0	16	29	383	396	376	405	0.65

Sequence Information

Coding Sequence: ATGGTCGTAAACATGGGCAGCAATCAACTGTACAGCCTTTCTTGGGGTGATTTTGGCACATCTTTAGCATCCACTTTTCAGGTGCTTAGAGGACAAGGTGAGCTGGTCGATGTTACATTAGCAGCTGGAGGTCGAATATTTCCTGCTCACAAGTTGGTTCTAAGTGCTGCTAGTCCGCTGCTGATGGAACTTTTAAAAAGCACTCATTGCCAGCATCCGGTTGTCATGTTAGCTGGTATCACTGCAAACGATTTAGAAGCTTTATTGGAATTTGTATATCAAGGAGAAGTCAGCGTCGACCCATCACAGTTGCCGTCACTCTTGCAGGCAGCTCATTGTTTGGATATTCAAGCATTATCTCCGACAATTTTAACAAATGATAAACCAGTCTTTGTCGATCACCCTCCTGAAGTCATCGTTACTCCTGGCGGTATGGATATGTCATCAAACGCCAGTGGCATGTCTCGTGATGACAACTCGGCACTACCTGTAAGAAAACGGAAACAAGGAAAACGGAAAAGTTCAGAGACATCCAATTCAAACCTTGTTGAAAAGTGGCCTCGCACAGACACAGAGAACACAGACCCTGTTGAAGCCTCCATGTCTGACAGTATGGGCTCACTGAAACATGATGAATCCGGAGGAGAAGATGGAGCGGGGCCCCCACCCCTAAGAATTTCTGCTTCGGATCAACCCCGTGATTGTCCTTTGTGCGGCTGCCTCATTCGCCAAGCTCGTAATCTAAGAAGACATCTGCTGACGTCGTGCAAGTACCGCCTGAACAATCCTTTCGACCCAGTCGCTTGCGGATCAACTCCGGAAGTTCTTGAATCAAACATGAAGAAACTCATATCTGATTTGCCTGTCGAGTGTTCAGTGTGCGGAGTGATTTTGAGACAGTCAAGGAATCTTCGAAGACACATGGAACTGATTCATTTCAAAGTAGGACCAAGGTTACCTCGTGGTCGAAAAGGTAGAAGCAAAGACTCCGATCCGAATTCCTCGGAAAACTTAGATGAAAATGAACTAAATGTCGATAGTCGTCAGTCAATGAATGAAAATGAAGGAAACCTAAGTGTCTCTATCGAAGCTCAGAATTCACCAATGGTCCGATCTGCGATAGTTTCTCCAGAACCTTCCAGCTCGCATTCTATGAGCCAGTCACCTCACCCATCACCAGCTCAAATAATTCATACCTCGAGATCATCCAGTACGGATCAGCAGAACCTCTCACCGCTTCCCGCGCACGTGCTAACGACCCCAGTTGTGGCTCAACAGATTCGGCCGCACTTAATGACTCAAATGTATCAAATACCGACCTCAGTTCCATCACAAATAGACGTTCATAATAACCAAAGTACCCCCGTAACAATTTGTGATAACCTTCAGACGAGTTTTATTCCCGCTAATGCTATGACTTTCACAACTCAAGATGCTAATAACTTCAGACAGCAACAAAACGAAATTTTGCGCAGTGCTTTGTACACGGATACGCGAGAGCATTGTCAAGCTGAATAGAATTTTGTTTCAAATTTTGTTCCTTTTTCATGTGCAATATTTTTGTGTTATTTGCTGTGCAGTGAATCCTGGCCACCTACTACTGACTAATGAAAGATATGAGTTGAGG
Protein Sequence: MVVNMGSNQLYSLSWGDFGTSLASTFQVLRGQGELVDVTLAAGGRIFPAHKLVLSAASPLLMELLKSTHCQHPVVMLAGITANDLEALLEFVYQGEVSVDPSQLPSLLQAAHCLDIQALSPTILTNDKPVFVDHPPEVIVTPGGMDMSSNASGMSRDDNSALPVRKRKQGKRKSSETSNSNLVEKWPRTDTENTDPVEASMSDSMGSLKHDESGGEDGAGPPPLRISASDQPRDCPLCGCLIRQARNLRRHLLTSCKYRLNNPFDPVACGSTPEVLESNMKKLISDLPVECSVCGVILRQSRNLRRHMELIHFKVGPRLPRGRKGRSKDSDPNSSENLDENELNVDSRQSMNENEGNLSVSIEAQNSPMVRSAIVSPEPSSSHSMSQSPHPSPAQIIHTSRSSSTDQQNLSPLPAHVLTTPVVAQQIRPHLMTQMYQIPTSVPSQIDVHNNQSTPVTICDNLQTSFIPANAMTFTTQDANNFRQQQNEILRSALYTDTREHCQAE*NFVSNFVPFSCAIFLCYLLCSESWPPTTD**KI*VE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01478566;
90% Identity: iTF_01478566;
80% Identity: iTF_01478566;