Tvap014123.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trialeurodes vaporariorum
Gene Symbol
-
Assembly
GCA_011764245.1
Location
HIC:27620783-27623302[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 5.4e-08 3.6e-06 27.1 2.0 1 23 246 268 246 268 0.98
2 21 1.5e-05 0.001 19.4 1.7 1 23 274 296 274 296 0.97
3 21 9e-05 0.0061 17.0 4.7 1 23 302 324 302 324 0.98
4 21 2.2e-06 0.00015 22.1 2.8 1 23 330 352 330 352 0.98
5 21 0.00011 0.0075 16.7 4.8 1 23 358 380 358 380 0.98
6 21 2.8e-06 0.00019 21.7 3.5 1 23 386 408 386 408 0.98
7 21 9.2e-07 6.2e-05 23.2 4.0 1 23 414 436 414 436 0.98
8 21 1.3e-05 0.0009 19.6 2.6 1 23 442 464 442 464 0.98
9 21 4.2e-06 0.00029 21.2 5.0 1 23 470 492 470 492 0.98
10 21 8.1e-06 0.00055 20.3 2.5 1 23 498 520 498 520 0.98
11 21 1e-05 0.00069 20.0 3.0 1 20 526 545 526 548 0.94
12 21 0.002 0.14 12.7 4.7 1 23 554 576 554 576 0.98
13 21 8.5e-06 0.00057 20.2 3.4 1 23 582 604 582 604 0.98
14 21 1.3e-06 9.1e-05 22.7 3.0 1 23 610 632 610 632 0.98
15 21 3e-05 0.002 18.5 2.1 1 20 638 657 638 660 0.94
16 21 0.002 0.14 12.7 4.7 1 23 666 688 666 688 0.98
17 21 4.8e-06 0.00033 21.0 3.8 1 23 694 716 694 716 0.98
18 21 7.8e-06 0.00053 20.3 3.8 1 23 722 744 722 744 0.98
19 21 0.00075 0.051 14.1 3.7 1 23 750 772 750 772 0.98
20 21 0.0003 0.02 15.3 2.7 1 23 778 800 778 800 0.98
21 21 1.1e-06 7.5e-05 23.0 3.5 1 23 806 828 806 828 0.98

Sequence Information

Coding Sequence
ATGAATCCGGGGACAGCAAACGTTGATCAGGAGATGTTTTGTCCTGAGTTGAAGTCTCTCTATTATTCCACCAAAGATAATGCTCTGAAAAAATATATTACTTTTAACGCTGGGAGTGCAATCAATGATGAGACTCTTATCATGAAGGAAGAAGAAGTAGAAGCATGGTTTGGGAAGAAAGTGAAAATAGTTTTGGAAAGAGTGCACGAGGCAAAAAGGGAAAACACAGAAACTCATCATGATAACTTTTGGAGTAACAGAAATCATTCTGAATCTGCTGCACCTACCTCCCAGTTCTCCTACGAGAATGAAATTTTGGACGAAAGAATAAAAAAAGAGAACGTCACCTATGAGGAGGACACTGGAGAATTAACTGAATTTAATTATCCAATAACAGATGATTTCAATTGCCTGAAAGAAAGAGATTGCAAAGATAATGAATTTAACAATTTTCAGTTTATATCTACGAGTGTTAAGTCAGAACCGTTTGAGGACGACTGTGGATCACTGCTTGAGACCGTTAGTGAAAGTTTAACAAACTTGCCATGTAAGCGTGAAGACTTTATATTCCCTGGACAATTGGAAAACAAAAGCTTAAGAAGTCAGTCTCAACCTGATACTAACCAGGTTTTGTACGGACCAATAAAATGGGAAACTGTTCATATGAGTGAGAATGCCGTTGGAGATCCGTTGGAACTTGAGAAAGAGATCCAGGTGCATACTGTGAAAGAACTCTTTGAATGCACCCATTGCAACAAAAAGTTTCCTGATAACAGTGCTTTGACAAACCACATGCGGGTGCATACTGAAGAAAAACCCTTTGTTTGCACCCTTTGCAGCAAGAAATTTTCTATGAAATTCAATTTGACTAAACACATCCTGGCACATACTGAGGAAAAACCCTATGAATGCGCCCATTGCAGCAAAAAGTTTTCAGACAAAAAATATTTTACCGTACACACCCGGCTTCACACTGGAGAAAAACCCTTTGTTTGCACCTATTGCAACAAGAAATTTTCTCTGAAAAGCTATTTGACTCAACACTTGAAGGTGCATACTGAGGGAAAACCCTATGAATGCGCCCATTGCAGCAAAAAGTTTTCAAACAAAAACTATTTTACCGTACACACCCGGCTTCACACTGGAGAAAAACCCTTTGTTTGCACCCATTGCAACAAGAAATTTTCTCTGAAAGGCAATTTGACTCAACACTTGAAGGTGCATACTGGAGAAAACCCCTTTGTTTGCACCCATTGCAACAAAAAGTTTTTTGAAAAATCTGCTTTGACTAGACACATGCGGGTGCATACTGGAGAAAAACCCTTTGTTTGCACCCATTGCAGCGAGAAATTTTCTGAGAAAAGCAAATTGACTGGACACATGCGGGTGCATACTGGAGAAAACCCCTTTGTTTGCACCCATTGCAGCAAGAAATTTTCTTTTAGAAGCCAATTGACTCAACACATCCGGTTGCACACTGGAGAAAAACCCTTTGTTTGCACCCATTGCAACAAGAAATTTGCTCTGAATGGCAGTTTGACTAAACACTTGAAGGTGCATACTGGAGATAACCCCTTTGTTTGCACCCATTGCAACAAAACGTTTTTTAAAAAATCTGCTTTGACTAGGCACATGTGGGTGCATACTGGGGAAAAACCCTTTGAATGCGCCCATTGCTGCAAAAAGTTTTCGCGAAAAGTCCTTTTGGCCTATCACATCCGGATGCATACTGGGGAAAACCCCTTTGAATGCGCCCATTGCAGCAAGAAATTTTCTTTTAGAAGCCAATTGACTGATCACATCCGGTTGCACACTGGAGAAAAACCCTTTGTTTGCACCCATTGCAGCAAGAAATTTTCTAGGAGAGGCGATTTGACTAAACACTTGCTGGTGCATACAGGGGAAAAACCCTTTGTTTGCACCCATTGCAACAAAAAGTTTTCTTATGAAAGTGATTGGACTAGGCACATGTGGGTGCATACTGGGGAAAAACCCTTTGAATGCGCCCATTGCTGCAAAAAGTTTTCGCGAAAAGTCCTTTTGGCCTATCACATCCGGATGCATACTGGGGAAAACCCCTTTGAATGCGCCCATTGCAGCAAGAAATTTTCTTTTAGAAGCCAATTGACTGAACACATCCGGTCGCACACCGGAGAAAAACCCTATGTTTGCACCCATTGCAGCAAGAAATTTTCTAAGAGAGGCGATTTGACTAAACACTTGCAGTTGCATACTGGGGAAAAACCCTTTGAATGCGCCCATTGCTGCAAAAAATTTTCGCGAAAAGACCTTTTGGCTGGTCACATCCGGATGCATACTAGGGAAAACCCATTTGAATGTGCCCATTGCAGCAAGAAATTTCCTTCTAGAGGCAAATTGACTGAACACTTCCGGTTGCACACTGGAGAAAAACCCTTTGTTTGCACCCATTGCAGCAAGAAATTTTCTAGGAGAGGTGATTTGACTAAACATTTGCAGGTGCATACTGGGAAAAACCATATGCAACATCAAGTTTTCTGA
Protein Sequence
MNPGTANVDQEMFCPELKSLYYSTKDNALKKYITFNAGSAINDETLIMKEEEVEAWFGKKVKIVLERVHEAKRENTETHHDNFWSNRNHSESAAPTSQFSYENEILDERIKKENVTYEEDTGELTEFNYPITDDFNCLKERDCKDNEFNNFQFISTSVKSEPFEDDCGSLLETVSESLTNLPCKREDFIFPGQLENKSLRSQSQPDTNQVLYGPIKWETVHMSENAVGDPLELEKEIQVHTVKELFECTHCNKKFPDNSALTNHMRVHTEEKPFVCTLCSKKFSMKFNLTKHILAHTEEKPYECAHCSKKFSDKKYFTVHTRLHTGEKPFVCTYCNKKFSLKSYLTQHLKVHTEGKPYECAHCSKKFSNKNYFTVHTRLHTGEKPFVCTHCNKKFSLKGNLTQHLKVHTGENPFVCTHCNKKFFEKSALTRHMRVHTGEKPFVCTHCSEKFSEKSKLTGHMRVHTGENPFVCTHCSKKFSFRSQLTQHIRLHTGEKPFVCTHCNKKFALNGSLTKHLKVHTGDNPFVCTHCNKTFFKKSALTRHMWVHTGEKPFECAHCCKKFSRKVLLAYHIRMHTGENPFECAHCSKKFSFRSQLTDHIRLHTGEKPFVCTHCSKKFSRRGDLTKHLLVHTGEKPFVCTHCNKKFSYESDWTRHMWVHTGEKPFECAHCCKKFSRKVLLAYHIRMHTGENPFECAHCSKKFSFRSQLTEHIRSHTGEKPYVCTHCSKKFSKRGDLTKHLQLHTGEKPFECAHCCKKFSRKDLLAGHIRMHTRENPFECAHCSKKFPSRGKLTEHFRLHTGEKPFVCTHCSKKFSRRGDLTKHLQVHTGKNHMQHQVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01478316;
90% Identity
iTF_01478316;
80% Identity
iTF_01478316;