Tvap014758.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trialeurodes vaporariorum
Gene Symbol
-
Assembly
GCA_011764245.1
Location
HIC:4657756-4660134[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 3.6e-06 0.00024 21.4 1.8 2 23 236 257 235 257 0.97
2 20 0.00013 0.0087 16.5 0.3 5 23 267 285 266 285 0.96
3 20 1.8e-06 0.00012 22.3 3.4 1 23 291 313 291 313 0.99
4 20 4.2e-07 2.8e-05 24.3 3.1 1 23 319 341 319 341 0.99
5 20 2.9e-06 0.0002 21.7 3.6 1 23 347 369 347 369 0.99
6 20 7.9e-07 5.4e-05 23.4 3.3 1 23 375 397 375 397 0.99
7 20 2.4e-06 0.00016 21.9 4.0 1 23 403 425 403 425 0.99
8 20 3.9e-06 0.00026 21.3 2.9 1 23 431 453 431 453 0.99
9 20 0.012 0.83 10.3 4.9 1 23 459 481 459 481 0.97
10 20 1.8e-06 0.00012 22.3 3.4 1 23 487 509 487 509 0.99
11 20 0.00041 0.028 14.9 6.1 1 23 515 537 515 537 0.99
12 20 2.9e-06 0.0002 21.7 3.6 1 23 543 565 543 565 0.99
13 20 3.7e-07 2.5e-05 24.5 4.4 1 23 571 593 571 593 0.99
14 20 2.4e-07 1.7e-05 25.1 4.1 1 23 599 621 599 621 0.99
15 20 1.1e-05 0.00072 19.9 3.0 1 23 627 649 627 649 0.98
16 20 0.003 0.2 12.2 3.9 1 23 655 677 655 677 0.97
17 20 0.00013 0.0087 16.5 1.1 1 23 683 705 683 705 0.98
18 20 1.8e-06 0.00012 22.3 3.4 1 23 711 733 711 733 0.99
19 20 0.00015 0.01 16.3 4.7 1 23 739 761 739 761 0.99
20 20 2.9e-06 0.0002 21.7 3.6 1 23 767 789 767 789 0.99

Sequence Information

Coding Sequence
ATGATGATCCAGATTCCTCTGGTCTGGCTGGGATCAAAGTCCGGAACTCAGTCCACTTCAAACATTCTTGCGCAGAATTATGTCACTTTCAACTCAATAGAGGGAGGCAAACACAGGACTCTAAAGATGAAGGAAGAAAATGTGGAAGCGTATTTTGGGAAGCAGCTAAAAATCGTTCTGGAAAGAGTGGACAAGGTAAAAACGGGAGACGGGACACCAGAGTCAGCTCATCAAAACACCGTTCGCAGGAACTTAAATCATCGTGAAACTGCAGTGATCGATTCAAGGTATTTGTGCGATAACAGTTTAATGAAAGGGGAGATAAAATTGGAGAACCATCTCATCTGGGAAGAGGATACGGGAATGATGTTTGATCGTGAAAATCCATCAGAGGGAACCGAAGCATTATTGGAAGAAACGGATGACAAAAATATTGAATTGGGTGACATTCGGTTCTTATCTACAAGTATTAAATTGGAACCAAACTGGGACGATAATGAGGCCACCCTACCAGCTTTTTTAACTACTTTCACTAGTTCCCAGAAGCTGAAAGAAATTCATATTTTTCAGGACGAAAATAGGAAGGAAAACTGTAAAAGTGCATCTCAACAAGCAATCACGCAATCTTGTTTAGATACACAAATAAAATCAGAGACTTTTCATATTGGAACTAACAGAAATGCTGTTGCTTATAATATACCAATTGAATGTTCGCATTGTAATGCAAAATATTCATATAATAGCGCCTTAAAAAGACACATCAGGACACATACCGGTGAAAAACCTTTCAAATGGTCTCAGTGTGATGCAACATTTTCTGAAAAAGGCTCACTAAAAAAACACATCAGGACACATACTGGAGAAAAACCTTTTGAATGTTCCCATTGTAATGCAAAATTTTCTCTTAATAGCTCACTAAAAAGACACATCAGGACTCATAATGGAGAAAAACCTTTTGAATGTTCTCATTGTAATGCTAAATTTTCCTATAAAAGCAATTTGATACAACACATCAGGACACATACCGGTGAAAAACCTTTCAAATGTACTCATTGTAATGCTAAATTTTCTGTCAAAGGCAATCTGAGAAGACATGTGCGGTCACATACCCGTGAAAAACCTTTCAAATGTACTCATTGTGATGCAAAATTTTCTGAAAAAAGCTCATTAAAAATACACATCAGGACACATACCGGTGAAAAACCTTTTGAATGTTCTCATTGTAATGCAAAATTTTCTCTAAAAAGCTCACTAAAAAAACACATTAGAACACATACTAGAGAAAAACCATATGAATGTTCGCATTGCAATGCTAAGTTTTCTTTCAAAGGCAATCTGAGAACACACTTGAGGGTACATACCGGTGAAAAACCTTTTGAGTGCACATGTTGCCATGCCAAGTTTGCTCAAAGAAGCACTTTGAGTGTTCATCTAAAGACACATTCTGACGAAAAACCTTTTGAATGTTCGCATTGTAATGCAAAATTTTCTCTTAATAGCTCACTAAAAAGACACATCAGGACTCATAATGGAGGAAAACTTTTTGAATGTTCTCATTGCAATGCTAAATTTTCCTGTAAAAGCTATTTGATAAAACACATCAGGACACATACCGGTGAAAAACCTTTCAAATGTACTCATTGTAATGCTAAATTTTCTGTCAAAGGCAATCTGAGAAGACATGTGCGGTCACATACCCGTGAAAAACCTTTCAAATGTACTCATTGTGATGCAAAATTTTCTGAAAAAAGCTCATTAAAAAGACACATCAGGACACATACCGGTGAAAAACCTTTTGAATGTTCTCATTGTAATGCAAAATTTTCTCAAAAAAGCTCACTAACAAAACACATTAGAACACATACTAGAGAAAAACCATATGACTGCTCGCATTGCAATGCTAAGTTTTCTTTCAAAGGCAATCTGAGAACACACTTGAGGGTACATACCGGTGAAAAACCTTTTGAGTGCACGTGTTGCCATGCTAAGTTTGCTCGAAAAGGCAATTTGAGTGTTCATTTACAGACACATTCTGACGAAAAACCTTTTGAATGTTTGCATTGTAATGCAAAGTTTCGTTTAAAATCCCAACTGGACGCACACATTATTACACATACTGGTGAGAAACTTTTTGAATGTTCGCATTGTAATGCAAAATTTTCTCTTAATAGCTCACTAAAAAGACACATCAGGACTCATAATGGAGAAAAACCTTTTGAATGTTCTCATTGCAATGCTAAATTTTCCTGTAAAAGCAATTTGATAGAACACATCAGGACACATACCGGTGAAAAACCTTTCAAATGTACTCATTGTAATGCTAAATTTTCTGTCAAAGGCAATCTGAGAAGACATGTGCGGTCACATACTCGTGAATAA
Protein Sequence
MMIQIPLVWLGSKSGTQSTSNILAQNYVTFNSIEGGKHRTLKMKEENVEAYFGKQLKIVLERVDKVKTGDGTPESAHQNTVRRNLNHRETAVIDSRYLCDNSLMKGEIKLENHLIWEEDTGMMFDRENPSEGTEALLEETDDKNIELGDIRFLSTSIKLEPNWDDNEATLPAFLTTFTSSQKLKEIHIFQDENRKENCKSASQQAITQSCLDTQIKSETFHIGTNRNAVAYNIPIECSHCNAKYSYNSALKRHIRTHTGEKPFKWSQCDATFSEKGSLKKHIRTHTGEKPFECSHCNAKFSLNSSLKRHIRTHNGEKPFECSHCNAKFSYKSNLIQHIRTHTGEKPFKCTHCNAKFSVKGNLRRHVRSHTREKPFKCTHCDAKFSEKSSLKIHIRTHTGEKPFECSHCNAKFSLKSSLKKHIRTHTREKPYECSHCNAKFSFKGNLRTHLRVHTGEKPFECTCCHAKFAQRSTLSVHLKTHSDEKPFECSHCNAKFSLNSSLKRHIRTHNGGKLFECSHCNAKFSCKSYLIKHIRTHTGEKPFKCTHCNAKFSVKGNLRRHVRSHTREKPFKCTHCDAKFSEKSSLKRHIRTHTGEKPFECSHCNAKFSQKSSLTKHIRTHTREKPYDCSHCNAKFSFKGNLRTHLRVHTGEKPFECTCCHAKFARKGNLSVHLQTHSDEKPFECLHCNAKFRLKSQLDAHIITHTGEKLFECSHCNAKFSLNSSLKRHIRTHNGEKPFECSHCNAKFSCKSNLIEHIRTHTGEKPFKCTHCNAKFSVKGNLRRHVRSHTRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01478291;
90% Identity
iTF_01478291;
80% Identity
iTF_01478291;