Tvap014597.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trialeurodes vaporariorum
Gene Symbol
-
Assembly
GCA_011764245.1
Location
HIC:53034786-53037288[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0013 0.09 13.3 2.7 1 21 246 266 246 267 0.95
2 20 0.0013 0.085 13.4 7.0 1 23 302 326 302 326 0.98
3 20 1.3e-05 0.00086 19.6 2.4 1 23 332 354 332 354 0.99
4 20 1.2e-07 7.8e-06 26.1 3.3 2 23 361 382 360 382 0.97
5 20 2.7e-06 0.00018 21.8 5.0 1 23 388 410 388 410 0.99
6 20 9e-09 6.1e-07 29.6 2.4 1 23 416 438 416 438 0.99
7 20 2.2e-06 0.00015 22.1 1.6 1 23 444 466 444 466 0.99
8 20 6.1e-07 4.2e-05 23.8 6.9 1 23 472 494 472 494 0.99
9 20 6.1e-07 4.2e-05 23.8 6.9 1 23 500 522 500 522 0.99
10 20 9e-09 6.1e-07 29.6 2.4 1 23 528 550 528 550 0.99
11 20 6.1e-07 4.2e-05 23.8 6.9 1 23 556 578 556 578 0.99
12 20 9e-09 6.1e-07 29.6 2.4 1 23 584 606 584 606 0.99
13 20 2.2e-06 0.00015 22.1 1.6 1 23 612 634 612 634 0.99
14 20 6.6e-06 0.00045 20.5 1.7 1 23 640 662 640 662 0.99
15 20 6.5e-06 0.00044 20.6 7.2 1 23 668 690 668 690 0.99
16 20 6.3e-06 0.00043 20.6 4.8 1 23 696 718 696 718 0.99
17 20 5.7e-07 3.8e-05 23.9 8.8 1 23 724 746 724 746 0.99
18 20 4e-07 2.7e-05 24.4 6.4 1 23 752 774 752 774 0.99
19 20 3e-08 2e-06 27.9 4.1 1 23 780 802 780 802 0.98
20 20 0.00022 0.015 15.7 4.3 1 23 808 830 808 830 0.99

Sequence Information

Coding Sequence
ATGGAAGATTTACGGTCATTCAAGGTAGAGAGCGATCTAATGAATTATGAATCTCTTCATGACCCCCTTGTCCATCACAAGAGTCACGATGATACTACAGCTTCTGATTTATTTAATGTGAATCATATTGCGACTGGACCAGTCAAAATAGAGAATTATTTCATCCTTGAAGAGGACACAGGAGAAGTGGTTTACTGCAACCCAAATCTAGACGTTGAGTTGTCTCACCCAGCAGAAAGAGATGTGAAGGATATTGAACTCAGCAATGTTCAGTTCTTATCGACAAGTATAAAATTGGAAACAGATCAGAATGAAGGAAAAGACATTGTCAAGCAAGTTATTAGTAATTTCACATGTTTCCAGAAGGAGGAAGGAAATGATGACCTCTTTGATGAAAAAGAAAAAATGGATGACACATTCAGGATGCATCCTGAGATTATCCAAGGTTATTCGGATATCAAATCAGAACCTAGTCCTATGAGTGAGGATGCTATGGACGATGTGTCAGAGATCAAGGGAGAAATCTTAAGTAAATCAACCAATGCAGAGGAAACGTTGAGCACTGCCGCAGCCAGCCTTGAGCTTTTGAAGAGAGATCAACAATCAGCACATCAAATGATGTCTGACTCACAATCAGAGAAAAAAGTTTTAACCTATACAGACAGTTTGAGCTTCAGTCATGCTTCAGAGGATGAATTAAACGGATATGCAAAGAAACATATTAGCGAAGGACATTTTGTGTGCACTCTTTGCAATTTAGATTTTTCCAACCAATGCACTCTGAGAAGACATTTCAGAATGTGTAACAAACGTAATCTCTTTCCACGTGCCATCTGTGCTACAATATTTATTCGGGAAAGCTCTTTAAAATCGAACGTTAGTAGACATAGTGGGGAAAAGCCCTTTGAATGCTCTCAATGTGATAAAAATAAAAAATTTTCTCAGAAACACCACCTTAGTAGCCACCTCAGAACACATACTGGGGAAAAACTATTTGAATGCACACACTGTGAAGCAAAATTTGGTGATTCAAACACTCTTAAAAAACATATCAGAACACATACTGGGGGAAAGCTCCTTGAGTGCTCTCACTGTGATAAAAAATTTTCTCGTAAAGAATATCTTATTAAGCACATCAGAACACATACTGGGGAAAAACCCTTCAAATGCACTCACTGTGATAAAAAATTTTCTCAGAAAAACCGTCTTATTATCCACCTCAGAACACATACTGGGGAAAAGCCCTTTGAATGCTCTCACTGTGATAAAATATTTTCTGATAAATGGAATCTTCAGAGACACATCAGAACACATACTGGGGAAACCCCCTTTCGATGCACATACTGTGATGCAAAATTTTCTCTTAAAGAATATCTTATTAAGCACATCAGAACACATACTGGGGAAAACCCCTTCAAATGCACTCACTGTGATAAAAAATTTTCTCAGAAAAACCATCTTATTATCCACCTCAGAACACATACTGGGGAAAAGCCCTTCAAATGCACTCACTGTGATAAAAAATTTTCTCAGAAAAACCATCTTATTATCCACCTCAGAACACATACTGGGGAAAAGCCCTTTGAATGCTCTCACTGTGATAAAATATTTTCTGATAAATGGAATCTTCAGAGACACATCAGAACACATACTGGGGAAAACCCCTTCAAATGCACTCACTGTGATAAAAAATTTTCTCAGAAAAACCATCTTATTATCCACCTCAGAACACATACTGGGGAAAAGCCCTTTGAATGCTCTCACTGTGATAAAATATTTTCTGATAAATGGAATCTTCAGAGACACATCAGAACACATACTGGGGAAACCCCCTTTCGATGCACATACTGTGATGCAAAATTTTCTCTTAAAGAATATCTTATTAAGCACATCAGAACACATACTGGGGAAAAACCCTTTAGATGCCCATACTGTGATGACAAATTTTCTCTTAAAGAATATCTTACTAAGCACATCAGAACACATACTGGGAAAAAGCCCTTTGAATGCTCTCACTGTTGTAAAAAATTTTCTGATAAAGGGAATCTACAGAGGCACATGAGAACACATACTGGGGAAACGGCCTTTGAATGCTCTCACTGTGATAAAAAATTTTCTCAGAAACTCTACCTTAGTAGCCACCTCAGAACACATACTAGGGAAAAAACCTTTGAATGCACTCACTGTGATAAAAAATTTTCTCAGCAACACCATCTGATTAGGCACCTCAGAACACATACTGGGGAAAAACCCTTTGAATGCTCTCACTGTGATAAAAATTTTTCTCAGAAATACCATCTTACTATCCACCTCAGAACACATACTGGGGAAAAGCCCTTTGAATGCTCTCACTGTGAAAAGAAATTTTCTGATAAAGGGAATCTTCAGAGACACATGAAAACACATACTGGGGAAAAGCCCTTTGAATGCTCTCACTGTGAAAAGAAATTTTCTAAGAAAATCATTCTTAATAAGCATCTCAGAACACATACTATTGTAAAAC
Protein Sequence
MEDLRSFKVESDLMNYESLHDPLVHHKSHDDTTASDLFNVNHIATGPVKIENYFILEEDTGEVVYCNPNLDVELSHPAERDVKDIELSNVQFLSTSIKLETDQNEGKDIVKQVISNFTCFQKEEGNDDLFDEKEKMDDTFRMHPEIIQGYSDIKSEPSPMSEDAMDDVSEIKGEILSKSTNAEETLSTAAASLELLKRDQQSAHQMMSDSQSEKKVLTYTDSLSFSHASEDELNGYAKKHISEGHFVCTLCNLDFSNQCTLRRHFRMCNKRNLFPRAICATIFIRESSLKSNVSRHSGEKPFECSQCDKNKKFSQKHHLSSHLRTHTGEKLFECTHCEAKFGDSNTLKKHIRTHTGGKLLECSHCDKKFSRKEYLIKHIRTHTGEKPFKCTHCDKKFSQKNRLIIHLRTHTGEKPFECSHCDKIFSDKWNLQRHIRTHTGETPFRCTYCDAKFSLKEYLIKHIRTHTGENPFKCTHCDKKFSQKNHLIIHLRTHTGEKPFKCTHCDKKFSQKNHLIIHLRTHTGEKPFECSHCDKIFSDKWNLQRHIRTHTGENPFKCTHCDKKFSQKNHLIIHLRTHTGEKPFECSHCDKIFSDKWNLQRHIRTHTGETPFRCTYCDAKFSLKEYLIKHIRTHTGEKPFRCPYCDDKFSLKEYLTKHIRTHTGKKPFECSHCCKKFSDKGNLQRHMRTHTGETAFECSHCDKKFSQKLYLSSHLRTHTREKTFECTHCDKKFSQQHHLIRHLRTHTGEKPFECSHCDKNFSQKYHLTIHLRTHTGEKPFECSHCEKKFSDKGNLQRHMKTHTGEKPFECSHCEKKFSKKIILNKHLRTHTIVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01478306;
90% Identity
iTF_01478306;
80% Identity
iTF_01478306;