Tvap016798.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trialeurodes vaporariorum
Gene Symbol
-
Assembly
GCA_011764245.1
Location
HIC:49222331-49224766[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 2.1e-05 0.0014 19.0 2.1 1 23 7 29 7 29 0.97
2 28 5.3e-07 3.6e-05 24.0 2.7 1 23 35 57 35 57 0.99
3 28 1.4e-07 9.7e-06 25.8 2.9 1 23 63 85 63 85 0.99
4 28 3e-05 0.002 18.5 4.2 1 23 91 113 91 113 0.99
5 28 3.9e-06 0.00027 21.3 5.8 1 23 119 141 119 141 0.99
6 28 8.7e-07 5.9e-05 23.3 1.8 1 23 147 169 147 169 0.99
7 28 0.00066 0.045 14.3 5.5 1 23 175 197 175 197 0.98
8 28 1.1e-05 0.00075 19.8 5.4 1 23 203 225 203 225 0.99
9 28 0.00013 0.009 16.5 2.2 1 23 231 253 231 253 0.99
10 28 3.2e-06 0.00022 21.5 5.4 1 23 259 281 259 281 0.99
11 28 3e-05 0.002 18.5 4.2 1 23 287 309 287 309 0.99
12 28 0.035 2.4 8.8 0.8 1 17 315 331 315 337 0.89
13 28 1.1e-05 0.00073 19.9 3.3 1 23 343 365 343 365 0.99
14 28 5.3e-07 3.6e-05 24.0 2.7 1 23 371 393 371 393 0.99
15 28 1.4e-07 9.7e-06 25.8 2.9 1 23 399 421 399 421 0.99
16 28 3e-05 0.002 18.5 4.2 1 23 427 449 427 449 0.99
17 28 3.9e-06 0.00027 21.3 5.8 1 23 455 477 455 477 0.99
18 28 0.00013 0.009 16.5 2.2 1 23 483 505 483 505 0.99
19 28 3.2e-06 0.00022 21.5 5.4 1 23 511 533 511 533 0.99
20 28 3e-05 0.002 18.5 4.2 1 23 539 561 539 561 0.99
21 28 1.1e-05 0.00073 19.9 3.3 1 23 567 589 567 589 0.99
22 28 1.1e-05 0.00073 19.9 3.3 1 23 595 617 595 617 0.99
23 28 0.00013 0.009 16.5 2.2 1 23 623 645 623 645 0.99
24 28 1.4e-05 0.00098 19.5 2.7 1 22 651 672 651 672 0.97
25 28 9.4e-08 6.4e-06 26.4 3.0 1 23 679 701 679 701 0.99
26 28 0.0002 0.014 15.9 0.4 1 23 707 729 707 729 0.99
27 28 3.9e-07 2.7e-05 24.4 1.1 1 23 735 757 735 757 0.99
28 28 9.9e-08 6.7e-06 26.3 4.0 1 23 763 785 763 785 0.99

Sequence Information

Coding Sequence
ATGTTTAATGACAAATCATTTGCATGCACTTACTGCAATGCAAAGTTTTCTCAAAAGGGCCACATGATCGAGCATATCAGAAAACATACCGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTCGGAAGAGCGATCTGAAGCTTCACATCAGAACACATACCAGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTAGAGAGAGCAATCTGAAGCGACACATCAGAACACATACCGATGAAAAACCATTTAAATGTACTCACTGTATAGCAAAATTTTCTGTAAAGAGCAATCTGAAGAAGCACATCAGAACACACACCGGTGAAAAACCATTTGAATGCAGTCACTGTAATGCAAAATTTGCTCAGAAAAGCCATATGAAAAGACACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTGGAGAGAGCAATCTGAAGCGACACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCACTGCATAGCAAAATTTACCATAAAGAGCCATCTGAAGAAGCACATCAGAACACACACCGGTGAAAAACCATTTGAATGCAGTCACTGTAATGCAAAATTTGCTCAGAAAAGCCATATGAAAAGTCACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTAGTATGAGCATTCTGAAGCGTCACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTCACAAAACCGATCTGAAGCGACACATCAGAACACATACCGGTGAAAAACCATTTAAATGTACTCACTGTATAGCAAAATTTTCTGTAAAGAGCAATCTGAAGAAGCACATCAGAACACACACCGGTGAAAAACCATTTGAATGCACTCATTGTAATGCGAAATTTGCTGACAAGAGCAAAATGAAGAGTAACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCATTGTAATGCGAAATTTGCTGACAAGAGCAAAATGAAGAGTCACATCAGAACACACACTGGTGAAAAACTATTTGAATGCACTCACTGCAATGCAAAATTTGCTCGGAAGAGCGATCTGAAGCTTCACATCAGAACACATACCAGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTAGAGAGAGCAATCTGAAGCGACACATCAGAACACATACCGATGAAAAACCATTTAAATGTACTCACTGTATAGCAAAATTTTCTGTAAAGAGCAATCTGAAGAAGCACATCAGAACACACACCGGTGAAAAACCATTTGAATGCAGTCACTGTAATGCAAAATTTGCTCAGAAAAGCCATATGAAAAGACACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTAGTATGAGCATTCTGAAGCGTCACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTCACAAAACCGATCTGAAGCGACACATCAGAACACATACCGGTGAAAAACCATTTAAATGTACTCACTGTATAGCAAAATTTTCTGTAAAGAGCAATCTGAAGAAGCACATCAGAACACACACCGGTGAAAAACCATTTGAATGCACTCATTGTAATGCGAAATTTGCTGACAAGAGCAAAATGAAGAGTCACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCATTGTAATGCGAAATTTGCTGACAAGAGCAAAATGAAGAGTCACATCAGAACACACACTGGTGAAAACCCATTTGAATGCACTCACTGCAATGCAAAATTTGCTAGTATGAGCATTCTGAAGCGTCACATCAGAACACACACTGGTGAAAAACTATTTGAATGCACTCACTGCAATGCAAAATTTGCTCACAAAACCGATCTGAAGAAGCACATCAGAACATTTACTGGTGAAAAATCATTTGAATGCACTCACTGCGATGCAAAATTTGCTCGAAAGAGCAATCTGAAGTCTCACATTAGAACACATACCGGTGAAAAACCATTCGAATGCACTGATTGCAATGCAAAATTTGCTTGGAAGAGCGTTCTGAAGAATCACATCAGAACACATACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAATATTTGCTCGAGAGAGCGCTCTGAAGCGACACATCAGAACACATACAGGGACAAAACCATTCGAATGCACTCACTGCAATGCAAAATTTGCTCGTAAGAGCAATCTGAAGAAGCACATCAGAACACATACCAGTGAAAAACCATTTGAATGCAAAATTTCATCAAAATCACTCTCTAAGCTTATTAGAACACATGCTGGTGATGAATGA
Protein Sequence
MFNDKSFACTYCNAKFSQKGHMIEHIRKHTGEKPFECTHCNAKFARKSDLKLHIRTHTSEKPFECTHCNAKFARESNLKRHIRTHTDEKPFKCTHCIAKFSVKSNLKKHIRTHTGEKPFECSHCNAKFAQKSHMKRHIRTHTGEKPFECTHCNAKFAGESNLKRHIRTHTGEKPFECTHCIAKFTIKSHLKKHIRTHTGEKPFECSHCNAKFAQKSHMKSHIRTHTGEKPFECTHCNAKFASMSILKRHIRTHTGEKPFECTHCNAKFAHKTDLKRHIRTHTGEKPFKCTHCIAKFSVKSNLKKHIRTHTGEKPFECTHCNAKFADKSKMKSNIRTHTGEKPFECTHCNAKFADKSKMKSHIRTHTGEKLFECTHCNAKFARKSDLKLHIRTHTSEKPFECTHCNAKFARESNLKRHIRTHTDEKPFKCTHCIAKFSVKSNLKKHIRTHTGEKPFECSHCNAKFAQKSHMKRHIRTHTGEKPFECTHCNAKFASMSILKRHIRTHTGEKPFECTHCNAKFAHKTDLKRHIRTHTGEKPFKCTHCIAKFSVKSNLKKHIRTHTGEKPFECTHCNAKFADKSKMKSHIRTHTGEKPFECTHCNAKFADKSKMKSHIRTHTGENPFECTHCNAKFASMSILKRHIRTHTGEKLFECTHCNAKFAHKTDLKKHIRTFTGEKSFECTHCDAKFARKSNLKSHIRTHTGEKPFECTDCNAKFAWKSVLKNHIRTHTGEKPFECTHCNAIFARESALKRHIRTHTGTKPFECTHCNAKFARKSNLKKHIRTHTSEKPFECKISSKSLSKLIRTHAGDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01478290;
90% Identity
iTF_01478290;
80% Identity
iTF_01478290;