Tvap018089.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:11945036-11945872[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7 1.1e+03 -0.6 0.0 17 24 33 40 30 41 0.84 2 2 2.8e-07 0.00018 21.1 0.1 2 41 95 134 94 137 0.89
Sequence Information
- Coding Sequence
- ATGAAACCAGAGCAGACTGAACCTGCAACATTAGTCAAATCGTTTCAATATTCCAAATACCGCCAGCTGTACCTTCAGCAACAAGAGTTGAAAAATGTTAGTCTGTGCCGTGCAGCAAAGCAAGGGAAATTGTATGGCGGATTTTCCGTAAACCAATCGAGAGGGGGTGGTCCCTCTGTTGTTTGGTGGGTCCGCATCATGGTGAGAATAGAAACAGTTCGAAGAAAATTGTCAAGAAAGTCTAAGCCTCATCTCCGTCTGAGACCATACATGACATACAATGATGAATCAATGGAACAGGCAGTGGCTGCAGTCAATGCGGGATCCACTATACGAAGGGCCGCAGAACAATACGGGTCTTCCAAGTTAACTCTGCAGCGAAAAGTTAACAAGAAACAGATGAAAAGCCCAGGACGTCCTTGTGTTCTAAGTGCAGCCGAAGAAACTAAAATTTGTGATTACATTGCTGATTGTGCTGAATGGGGTTTCCCTTTGTCAGGTACAGATGTGTGTTTTGTTATCAAAGACTATTACGATAGAAGAGGTATAAGAGCTCCTCAGTTTGTGAACAATCTCCCGGGGAAAGACTGGGTTGTTGGTTTTCTCAATCGACACAGTAAAGTTTTGTCGCAGCGACTTTGTGATAACATCAAGCGGAAAGTAATTTATCGGGAGGTGCTTCCACTAGGGGCCCCTGTTGCCCCGATTAGAAGACATCCGTCACCGACATTCACTCCATCTCAACTCAATCCAAGCCAACCAAACTTGCTTGGTGATTCATCTATAAATGAAACCGAAATGGAAGTCGGCCGCGTGCATAACCCCAATGTGTTGTAA
- Protein Sequence
- MKPEQTEPATLVKSFQYSKYRQLYLQQQELKNVSLCRAAKQGKLYGGFSVNQSRGGGPSVVWWVRIMVRIETVRRKLSRKSKPHLRLRPYMTYNDESMEQAVAAVNAGSTIRRAAEQYGSSKLTLQRKVNKKQMKSPGRPCVLSAAEETKICDYIADCAEWGFPLSGTDVCFVIKDYYDRRGIRAPQFVNNLPGKDWVVGFLNRHSKVLSQRLCDNIKRKVIYREVLPLGAPVAPIRRHPSPTFTPSQLNPSQPNLLGDSSINETEMEVGRVHNPNVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01478114;
- 90% Identity
- iTF_01478114;
- 80% Identity
- -