Tsep004656.1
Basic Information
- Insect
- Trachymyrmex septentrionalis
- Gene Symbol
- -
- Assembly
- GCA_001594115.1
- Location
- NW:3160400-3170289[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.5 2.8e+02 1.5 0.1 2 17 71 86 70 87 0.88 2 19 0.23 15 5.6 7.5 2 23 322 344 321 344 0.97 3 19 0.029 1.8 8.4 2.2 1 23 393 415 393 415 0.97 4 19 0.86 54 3.8 1.1 1 23 464 486 464 486 0.97 5 19 0.021 1.3 8.9 0.2 1 21 534 554 534 555 0.93 6 19 0.00085 0.054 13.3 1.8 1 23 595 617 595 617 0.98 7 19 0.00013 0.0083 15.8 0.5 1 23 664 686 664 686 0.95 8 19 0.0027 0.17 11.7 0.1 1 23 692 714 692 714 0.97 9 19 1.5e-05 0.00094 18.8 0.2 1 23 757 780 757 780 0.96 10 19 0.0022 0.14 12.0 0.6 1 23 786 809 786 809 0.96 11 19 3.1e-05 0.002 17.8 2.5 2 23 817 839 816 839 0.97 12 19 0.00011 0.0071 16.0 0.0 1 23 847 869 847 869 0.93 13 19 0.062 3.9 7.4 0.1 1 20 929 948 929 948 0.97 14 19 0.11 7.1 6.6 0.4 2 23 968 989 967 989 0.96 15 19 1.4e-06 8.7e-05 22.0 1.0 1 23 1002 1024 1002 1024 0.98 16 19 9e-05 0.0057 16.3 3.1 1 23 1046 1069 1046 1069 0.94 17 19 0.0024 0.15 11.9 1.1 2 23 1127 1149 1126 1149 0.95 18 19 0.00037 0.023 14.4 1.6 1 23 1167 1190 1167 1190 0.93 19 19 0.003 0.19 11.5 0.4 2 23 1283 1305 1282 1305 0.95
Sequence Information
- Coding Sequence
- ATGGACGAGAACGTGGTGGAGATCGAAAACGAGGAGACGATCGAGAACGTGGAGAATGTCTGCAGACTGTGCCTTTCCACGGATGGACCTAGAGCTTCGGTGTTTGGAACgcaggagaaagagaaggagtcGTCCAGCGTGTCGCTGATCGCTAAGATTCGGGCCTGCCTGTCGATCCAGattttgacAACTGATAAGCTGTCCACGTGGATATGCACAAATTGTGTGAAAAGCGTTAATCAATGGTATACCTACAAGGAATCGTGTTTGCGTTCTCAGGACAAACTACAAGAATGGCTAGCAAATCAATTTGCTAGTTCGACATTGCAGTCGAATCCTACGGTTATTAGGATCAAAAGTGAACCAATGGACATAGATTACGAAAATAGTGTAGAAATTATCGAGGAGATCGTCAATAATGTAGAAGTTATCAAGGAGGCAGCCAATAATGTAGAAGTAATCGAGAAGATCACCAATAATGTAGAAGTTGTCGAGAAGATCATCAATGATGTAGAAATTATTGAGGAGACCTCCACTAACTTGGAACAATcaCATCCGCCAGTTCAAACAGTGGAAAACAATGAATCTAGTAATGAAAAAGTGCAAGATGTAGTAGATAACAGCGATGTTAATGATGCTGCGATGAATGATACTAACAAAAATCCCGGATCAATCTCGTCCGCAATGGAAAAGGAAACTGATAAGGAGAAGAATCAAGCGGATCATCAGGATTCTGTAGTTCTGTGTTCCATTAAAAGCGAACCGCAAGATGAAGATGATACCGATGGTACTATAGAAGTAGAATCGAATAGTGAATTGAATGCCATGGCAGTCGATGAGGTAGAGGACACTGTCATGGAGGCTGATTCCACGCAAAAGTCTAATGCGGCTGGCGCATCGCCTAAGAAGAAATTCAGACGCGGTCCTCATACTCACTTCAGAGGAACGCGTGTTTTTAAGCAGAAGTGCACGCACTGCCAGATATTTTTGCATTCTAAATACTCGTACATGAAACACATGAAGAGATTCCACAGTAAAGAAAATGGCATTGGAAATTCAGAGATGCAGAACGACGACGAGGAGATGATAGAGGATCTAGAAGATGAATTGATCAGTATGGAGAAGGACTCGCCGCTGACGCAAGTTCAACAGGATATTATTAGTCAACTGAAAACTTTTTCTTGCTACTCTTGCGAACAGACCTTTAACGATCGACGTAGCACTCTTTCTCATATACGTCAACATATGCCGGATCTAAGACCATACACATGTATTGCTTGTTTGACAGAATTTCCAGATCGATCAATGTATCAGTTGCATTGCGGAGCTTCCTTCGAATGCGCCATGAAGATTGCCCTAGTTGTACCGAAACACGGTAGCGAGCGATATTTTACATGTAACATGTGCTTGCGTTCAATGCAAGGTAGAAAGGAGTTACTCAGTCATTTGTCGAAGCATTCTGATAAGCAGTACGAAGAGATGATGTCATCGTCAACGCGAGCCCCGCCTAAACTGAAGCCGATGGCGCCGTTGCCATCGAAAAACAACACTCTGCGTAAGAGTGGATCGCCTTATAAAAATGGTGATCCAAAATATAATCATGCCTGCGATCTATGCGGCATGATCTACCGATATCGGCCCAATATGCTCAAGCACAGAAAGATATGTGCGCAATTGGACCCAGACAACAGAATATTGTACAAGTGCGTGCATTGTTACATGACGTTCCTTGTGTTTAAGAAGTTCCATTATCATATTACAGCCGatcataagaaaaaagattttacttgTTCTGAGTGCTTTTCGAAATTCCGATCACCCAGCGATTTTGTAACTCATTACGAAACCCATCGCACGACAACGCAAGATAATCAACAAGAGCAGTATGACAGTACCTCGCAGAATACAGTTCAAACGCCATTGAAGGAACGTAATGCTTATGAAACAAATGTTAAATCAAGAGTTAGTTCACGAATATCAAATCAGCAGCATCCTTGCCCTCTCTGTCCCGAAAAGTTCTCCACGAAGATTGAACTGAATGAGCATCGGACTCTTCATCtcaaaatgaagatatattcGTGCGCCATTTGCCGTAGCTTATTCAGCAGCGCTGGCTCCTTGGAGATTCATATGAAGGATCATGGTATCGAAGATGCGCACGAAAGGAACGCCAATGTCTCCTGCGTGGAATTCGGCAGTTTGGATGAGGATGTGAGGATTGAGAAAGATTTGGTGAATATTAGTAGCATCTCGGATCCTGGTCAAAATCATGAATGTGGCGAATGTGGTAAAGTATTATCCAGTTACGCTAATCTTCGACGACACGCTAAAATCGCTCACCGAAACACTAAGATCTATGATTGTGTCGATTGCTCGCGAATGTTTATGCGTAAAGATTTGTACGATACTCATATGGAGATCAAGCATAATTCTAAGAACACAATGCTGCAGTGTCCGCAATGTCCCAAGAGTTTTGTCTTCCATTCGAATTTTACTTATCACTTCCGTACTGCTCATCTCCAGAAATCACAAACCGGTTATGCCTGCGATATCTGCGGCAAAGTCTTTGTTGAGGAAGCATCTTTGAAAATACATAGGGGCTGGCACAATCGCGCCAATTCACGTTTGAGCACTCGATTTATACTGGGAGATCAAAATACATCTAATGATACGCAAAAGGAATCAAGTAGCGTTGAATCTGTTGAGACTTCAGAACGGCCGGCGAGAGCACGAAAATCCTTCCCTAATCCACCACTTCAACCACTAACAAAAACATCAGGGAATTACCAATGTCAAGTATGCAATGACAAATTCAATGATGTCGTAGAACTGAGAACCCATTTATGGGACGTCCACTGTGCTCGCAACAAACCAGAGAAGAGTTTCTCTAATGATGAGCTTCAATGCGAACTCTGCACGAACATTTTCCCCGATAAGGGAACTCTAGCATGTCATATGCAATGGCACAAGGCTAATCCTATTCTCAGTGACATACAAAAAACGTTCTCCTGCGATATATGCGGTAGGTCTTACAGTTCGAAGAAGGCTCTATGGAAGCACAAGAGACTTCACAAAGCTACCGTTGTAGcatcaattaaatttcaatctttggCTAGAAAACCGATGGCTACACAATTCCTGTGCAACTTCTGTCGCAAAGTCTTTTCAAGCAATCAATCTTTACAACGGCACAAACTCACTTTCCACAGTGATCCGCTGAATCAACAACGTGCGCAGCAACAGTACAACAGCAGTCAATCATCGTCACTTGATGAACCAAGGACAAAGCGTATAAAACCAgacattgaaaatgataattcGCAGACCAAATTGTCGCCTTTCGCCATGGACTTCGCTGGCGAGAGGAGGAAGCCGGTCATGTGCCATGtttgcaagaaaatattccCTAACATGAGCGTGCTGTACAAGCATAAGCAAATGGTCCACAAACGATCAAGAATACCTGAGTGTATACCGATGTCGACTCAGGATGGCAAATTTTCATGCAACATTTGCTTCAAGAAATTCCCCGGTCTATCAAATCTGCGACAACATTTCACAATCAAACACAAGAAGACGGCCGAAGCCAGCAACGCACCAATGGCAGTGAGCAATGAGAGAGTGTCGCTCCCGACACCCGAACGTTCAAAGGAGGGAACCTATGAAATGGCCTACAATAACGTGATGTACAGTTGTAAATTGTGCAAGCAGTGTCACGTCTTCAATATGAATTCTATCATAAGCCATATCACCAATGTGCACAACGCAGTGTATCAGGCCGATAGCAAGACGTTCCACAGGGAAGTCACTCTGAGCACTTACGTAGTAAAGGACGCGATCGGAACTACTTGTCCGCGATGCGATGTTAAATATCCTAATAACAGGGCTCTGAAGATACACTATATTAAGTTCCACGAAAATAacgattaa
- Protein Sequence
- MDENVVEIENEETIENVENVCRLCLSTDGPRASVFGTQEKEKESSSVSLIAKIRACLSIQILTTDKLSTWICTNCVKSVNQWYTYKESCLRSQDKLQEWLANQFASSTLQSNPTVIRIKSEPMDIDYENSVEIIEEIVNNVEVIKEAANNVEVIEKITNNVEVVEKIINDVEIIEETSTNLEQSHPPVQTVENNESSNEKVQDVVDNSDVNDAAMNDTNKNPGSISSAMEKETDKEKNQADHQDSVVLCSIKSEPQDEDDTDGTIEVESNSELNAMAVDEVEDTVMEADSTQKSNAAGASPKKKFRRGPHTHFRGTRVFKQKCTHCQIFLHSKYSYMKHMKRFHSKENGIGNSEMQNDDEEMIEDLEDELISMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKHGSERYFTCNMCLRSMQGRKELLSHLSKHSDKQYEEMMSSSTRAPPKLKPMAPLPSKNNTLRKSGSPYKNGDPKYNHACDLCGMIYRYRPNMLKHRKICAQLDPDNRILYKCVHCYMTFLVFKKFHYHITADHKKKDFTCSECFSKFRSPSDFVTHYETHRTTTQDNQQEQYDSTSQNTVQTPLKERNAYETNVKSRVSSRISNQQHPCPLCPEKFSTKIELNEHRTLHLKMKIYSCAICRSLFSSAGSLEIHMKDHGIEDAHERNANVSCVEFGSLDEDVRIEKDLVNISSISDPGQNHECGECGKVLSSYANLRRHAKIAHRNTKIYDCVDCSRMFMRKDLYDTHMEIKHNSKNTMLQCPQCPKSFVFHSNFTYHFRTAHLQKSQTGYACDICGKVFVEEASLKIHRGWHNRANSRLSTRFILGDQNTSNDTQKESSSVESVETSERPARARKSFPNPPLQPLTKTSGNYQCQVCNDKFNDVVELRTHLWDVHCARNKPEKSFSNDELQCELCTNIFPDKGTLACHMQWHKANPILSDIQKTFSCDICGRSYSSKKALWKHKRLHKATVVASIKFQSLARKPMATQFLCNFCRKVFSSNQSLQRHKLTFHSDPLNQQRAQQQYNSSQSSSLDEPRTKRIKPDIENDNSQTKLSPFAMDFAGERRKPVMCHVCKKIFPNMSVLYKHKQMVHKRSRIPECIPMSTQDGKFSCNICFKKFPGLSNLRQHFTIKHKKTAEASNAPMAVSNERVSLPTPERSKEGTYEMAYNNVMYSCKLCKQCHVFNMNSIISHITNVHNAVYQADSKTFHREVTLSTYVVKDAIGTTCPRCDVKYPNNRALKIHYIKFHENND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00182140;
- 90% Identity
- iTF_00016844;
- 80% Identity
- -