Tsep002516.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachymyrmex septentrionalis
Gene Symbol
-
Assembly
GCA_001594115.1
Location
NW:2754192-2759042[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0002 0.013 15.2 2.2 2 23 366 387 365 387 0.97
2 15 0.00041 0.026 14.3 3.8 2 23 394 416 393 416 0.95
3 15 1.5e-05 0.00098 18.7 2.0 2 23 496 517 495 517 0.97
4 15 2.5e-05 0.0015 18.1 4.3 1 23 523 545 523 546 0.96
5 15 0.002 0.13 12.1 0.6 1 20 551 570 551 573 0.94
6 15 2e-06 0.00012 21.6 0.8 1 23 591 613 591 613 0.98
7 15 4.8e-07 3e-05 23.5 1.2 1 23 619 641 619 641 0.97
8 15 3.8e-06 0.00024 20.6 2.4 1 23 647 669 647 669 0.98
9 15 0.00097 0.061 13.1 0.2 1 23 675 697 675 697 0.99
10 15 3e-05 0.0019 17.8 1.1 1 23 703 726 703 726 0.92
11 15 1.4e-05 0.00086 18.9 1.3 1 23 732 754 732 754 0.98
12 15 0.0003 0.019 14.7 4.7 1 23 760 782 760 782 0.98
13 15 3.8e-06 0.00024 20.7 0.4 1 23 788 811 788 811 0.97
14 15 2.7e-06 0.00017 21.1 0.9 1 23 817 839 817 839 0.96
15 15 6.5e-07 4.1e-05 23.1 4.8 1 23 845 867 845 867 0.99

Sequence Information

Coding Sequence
atgaacaaAGAAATGCCGTTAAGTGTGGAATGGATAccacaaaatacatatatgcacaATTCTTTCGATCACTTGCTGCCGGAAGATAGAAATCAGGACTTCTTAATCATAAAGCAAGAAGCAGAGTTTTTTCAAAGTACTCTGAATTCACAGCAATCTGCGCAAAACAAAATCATGCATCTGCAAGTTTTGTCTAAAGAGAATAAGGAAATCAAACAACAGAATAGTTATTTAGATTCAAcaCCCTGTCAAATAGATTCTTTAAATCAACTATCTAAAAGATTGAGTGATGATTCAgagaaattgtataataaaggTCGCATTGATGTAATAGAGATGACAGTTGATTCAacattgaattataaatattttttcgtttatgaAGATCAATTTTCCAAATTTGTTGTATTAAAAGCTCTCTGTAGCAATACAGCTAAAGAAGTCGCGGCGAATCTGTTAGATGTATTGGGGATCATAGGGCCACCACAAGTATTACAGAGCGGCAATGGACGTATATTTGCTGAACAAGTTGTATGTGAACTACGTTCGATGTGGaatgatttattcatattgCATGGGGACACGTCTAAGTGCGAAGTTAGCTACAGGGATTTTAAGAGCTCGCTTGAATCttggatgaaaaaaaatccaaCTAGAACCTGGTGCGAGGGACTGAACTTCATACAGATTGTTCATAACACTACGTATCGCTATCAGAACGGCAGAGTTCCATATGACGTATTGTTTAGACAAAATGCGCGCAAGAATTTTCAAGGTATAGAAAAAGATACGGAAAATCTGACAACAGAAGAAGAATGGATTAAACATTTGTCGAATAAGATGGATGGAGATGAGGCTGCAATGATGGAAGACACACAGAGTACATCAAACAATATCAATCAATACGaagaaaacgaaaatataCGAGATACACAGAGTCAAAATACACTTTCAAAAACCGACAATGCAAATATTCTTAGTTGCGTTATCGTGAAGAATGATgatctaaataatatacacaCGATGGATTCAACATCTACAGATAAAATAGTCGTGAAGAATGAATCAAAAGACAACGAAGATACTCAATCCCTCAAATGCGAGTACTGTCAAAAGCAATACATGAAAATAGGGCATTTGAAAAATCACATAAGAATTCACAAAGCGAAACAGGTTCTCCATTGTAAGCTGTGCAATAAAACGTTTAGCGTTCTGAGATTGTTCGAGAAGCATATGAAGCAATCACATGGAAAAGATAAAGCTgatgaagaaagagagataccAGTCagaaaaacaagaaacatTGCTAATACAAGATCTATGATTCAACTAACACAAGAAACATccgatttcaaaataatgaatgaaaattgTGATTTGTCGCTTGACACGAGAGAATCCTTTGGCAAAAACAATAAGAGCTCCAACCAAACCGGCAGACGGAAACTGCCCGCGGAGAATCGTGTATCAAAGACACAACCTCTAAAGTGTACGTTTTGTAAGCAAAAATTCAGTTTTCCAAGCGTGCTAGAAAGACATATGCGATCTCACACAAATGAACGACCGTATGAGTGCGAAGTATGcaaaaagagttttaagcAATTGGGTCATCTCAGTCAACACTCACTGACCCATCATGACTATCGTTCATTCCAGTGCACAGTATGTAGCATAAAGTTTGACTCGCTGGATTTGCTGAAGCAACATACACCCTCGCATAAAGGCGACGCCACGACAACAACATCAAAGATACGCGACGTCTATCGTCTGTTTGAATGTGATATCTGCAAAAAGGTATTCACAATGAAGAGCGTGCTAGAGCGACACATATTCACACACACGCAGGAACGTCATTATGACTGTAAGATATGCGGCAAGCGATTCAAGCAAGCTGGTCATGTCAAGTCACACATGTTGGTGCACACTGGAGAGCGTCGTTTTCAGTGCACCATATGTTCAAAACGTTTCAGTCTGTCGAACTCGTTGAAGAAGCACATGTATGTGCACAATGGTGAAAAGCCGTATCAGTGCGATGTTTGCGGTGCACGTTTCCTTGAGAAGCGCAACCTTAACGGCCATTTGCTGACGCACACCAACGAGCGTCCGTACTGCTGCAAGATCTGTGGTAAACGATACACTCTGGCAGACACTTTGCGTCGTCACGTCAGTGCCGCGCATGAAGATGGTCGTACATATCAGTGCGAGATTTGTGCCAAGATGTTCAAGCAATTGGCACATCTGTCGGTGCACAAAAAGGTACATAACGACGAACGACCCTTTCAATGTCATttatgcgaaaaaaatttcaagcatAAGAATGTACTCAAGTCGCACCTGGCGATCCATGCGAATGTACGACCATTTGAGTGTGACGTGTGCAAGGCGACATTTGTCAGGAAGACGAATCTGCAAACGCACATCTCGTCAGCGCACATGAACGAGCGTCCGTATACCTGCACCATCTGCGGCAAGCGCTTCAAACAGATTAGTCATCTAAACGGCCACGTGGTAGTGCATAGCAATTTGATGCCTTACAAGTGCGATTACTGTGATCGCCGGTGTAATCGATTAGATAATTTGAAAAAGCATATGCGCCTCCATATgaaaaataaggaataa
Protein Sequence
MNKEMPLSVEWIPQNTYMHNSFDHLLPEDRNQDFLIIKQEAEFFQSTLNSQQSAQNKIMHLQVLSKENKEIKQQNSYLDSTPCQIDSLNQLSKRLSDDSEKLYNKGRIDVIEMTVDSTLNYKYFFVYEDQFSKFVVLKALCSNTAKEVAANLLDVLGIIGPPQVLQSGNGRIFAEQVVCELRSMWNDLFILHGDTSKCEVSYRDFKSSLESWMKKNPTRTWCEGLNFIQIVHNTTYRYQNGRVPYDVLFRQNARKNFQGIEKDTENLTTEEEWIKHLSNKMDGDEAAMMEDTQSTSNNINQYEENENIRDTQSQNTLSKTDNANILSCVIVKNDDLNNIHTMDSTSTDKIVVKNESKDNEDTQSLKCEYCQKQYMKIGHLKNHIRIHKAKQVLHCKLCNKTFSVLRLFEKHMKQSHGKDKADEEREIPVRKTRNIANTRSMIQLTQETSDFKIMNENCDLSLDTRESFGKNNKSSNQTGRRKLPAENRVSKTQPLKCTFCKQKFSFPSVLERHMRSHTNERPYECEVCKKSFKQLGHLSQHSLTHHDYRSFQCTVCSIKFDSLDLLKQHTPSHKGDATTTTSKIRDVYRLFECDICKKVFTMKSVLERHIFTHTQERHYDCKICGKRFKQAGHVKSHMLVHTGERRFQCTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHMKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01406725;
90% Identity
iTF_01476420;
80% Identity
-