Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: -
Assembly: GCA_001594075.1
Location: NW:2354-17522[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.4 3.7e+02 1.3 4.9 1 20 175 194 175 196 0.90

2 16 1.2 85 3.4 0.5 2 17 204 219 203 220 0.90

3 16 0.0012 0.086 12.8 3.7 1 23 236 259 236 259 0.92

4 16 0.0061 0.42 10.6 1.1 1 23 618 641 618 641 0.94

5 16 0.54 38 4.5 0.7 5 23 648 667 647 667 0.94

6 16 0.26 18 5.5 0.8 2 23 673 694 672 694 0.97

7 16 1.1e-05 0.00079 19.2 0.2 1 21 870 890 870 891 0.96

8 16 0.00024 0.017 15.0 0.1 2 23 898 920 897 920 0.92

9 16 0.078 5.4 7.1 5.2 1 23 930 953 930 953 0.94

10 16 0.21 14 5.8 0.2 2 21 981 1000 980 1001 0.91

11 16 0.91 63 3.8 7.7 1 23 1042 1065 1042 1065 0.91

12 16 0.69 48 4.1 1.4 1 19 1112 1130 1112 1132 0.91

13 16 0.045 3.1 7.9 7.1 1 23 1140 1163 1140 1163 0.96

14 16 0.0019 0.13 12.2 0.6 1 23 1233 1256 1233 1256 0.93

15 16 0.24 16 5.6 0.4 1 23 1518 1541 1518 1541 0.95

16 16 0.0087 0.6 10.1 1.5 2 23 1568 1590 1567 1590 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.4	3.7e+02	1.3	4.9	1	20	175	194	175	196	0.90
2	16	1.2	85	3.4	0.5	2	17	204	219	203	220	0.90
3	16	0.0012	0.086	12.8	3.7	1	23	236	259	236	259	0.92
4	16	0.0061	0.42	10.6	1.1	1	23	618	641	618	641	0.94
5	16	0.54	38	4.5	0.7	5	23	648	667	647	667	0.94
6	16	0.26	18	5.5	0.8	2	23	673	694	672	694	0.97
7	16	1.1e-05	0.00079	19.2	0.2	1	21	870	890	870	891	0.96
8	16	0.00024	0.017	15.0	0.1	2	23	898	920	897	920	0.92
9	16	0.078	5.4	7.1	5.2	1	23	930	953	930	953	0.94
10	16	0.21	14	5.8	0.2	2	21	981	1000	980	1001	0.91
11	16	0.91	63	3.8	7.7	1	23	1042	1065	1042	1065	0.91
12	16	0.69	48	4.1	1.4	1	19	1112	1130	1112	1132	0.91
13	16	0.045	3.1	7.9	7.1	1	23	1140	1163	1140	1163	0.96
14	16	0.0019	0.13	12.2	0.6	1	23	1233	1256	1233	1256	0.93
15	16	0.24	16	5.6	0.4	1	23	1518	1541	1518	1541	0.95
16	16	0.0087	0.6	10.1	1.5	2	23	1568	1590	1567	1590	0.95

Sequence Information

Coding Sequence: ATGGCTCGAGTTCAACCATACGAAAGAGTTGTGAACGCTGTAATCATACGTACAAATCCAACACTTGGTATAGAAATCCAAAATGGGACGAAGATTAAGGAAGAGCCTATCGATACAACATCGAATACTGATACAACCGAAGATGATACTCCTATAGttagaaattattatagtttaattGATCATGATCATCATTATTACGACAAATCATTATCTAATACGTCATGTAAAAGCATAAATAACACAGAAAACAGACATTCATCGAATGGTCATAATGCACATTCAAACGACGTGACTAATACTGTTAATACAGATCGTAAAAatgcaaaaacaaaaaaagaaatagatgaTACCTTACCACGTTTTAAGAAACGAAAATATTCCAATGAAGTCTTTAGTAATAAAAACACTAGTGCATTATGTTCAGTAACCAAAAGTGTTaagagaaaaaggaaacaaAAAAGCATTAcattagattataaaaaaaaaatacaatgtaaaaataaattagtaaaaaacgGATTTACATGTGACATATGTTTTAGGAAATTCAATTGTCTTTCACATTGGAAACTCCATAAACAATATTACGAACTTGATAAAAGTAATAAGTGCAgggtttgtaataaatatttcgtaggTAATGACAAATTACAGTCTGATACGTGTCATTGCACACATAACGTGCGTATATTCTTATCTTCATACAATTGCAATTTTTGTGGTcgtatttttacgaaaaaattcCTTTTACAATCCCACTTATTTCATGTACATAATGagttaatatgttttaatgacACTGTTAAACGTGAATCCAAGatctttgaaataaatacatctCCTAAAGATGATATTTTAAGAACTAGCGCAAATAAAAACTCATTATGTTCAAATAATCTTGTTCAATCAGAAAAGATAAATACTACACTTATCAACGTAAATAAATCCCATAACGATGATGTGATTAATACTGAGAAATCAAGAACcgaaaaattattcaataatgaAGTGTCGCCAACTAAAAGATTACGGCAACCAACATTAACGGAATATCTTGAGCTTTACAAAAAGaaacacaatattaaattcAGTCCAAGTAAATTGAACGTTACAAAAGATGATTTTCCTACGTGTGCTTTACATCGTGATGATCAAATAGAAAAACTTCCAGAAGAACAAAATGGACCATCTGATCCTTTATCTACACAATCAGATAATCTTCTAAAACGAACGGTAAGTTCTATTCAGAAACAAAGTACGAAACATGAAGTGCATAAAAAGCCATTTGTAAAACTACATGCAGATGTTGAAATGATGAAGTCTTTTCTGGAAAAACTTTCTGATACGGTTGTCGAAGATAAAATAACCGAAGATGgaacaagtaatattatttcatatgatCGTGGAATACCTTACAGTTTACGATCTTTAAATGGAGTTTCTTCCGTGGAAGCAAGTTCAAATTTAGGAAAGAGGGAGAACAAAAGTATATCTAAGAAGTCTCGATTTGGTAcacaatttgatattaaaaataaaggaaacgAGATTGATTTAGAAAAGATAACTTCTAAAGTGGATTGGAAAATTATTATGGCTCATTTTAAATGCAGGGAgtgttcaatttttttaacaagatgTGATGAACAACCAAGAAATTCTTATCAAATTTCTGCTCTTAAATCCATGAAAAACACTTGTCTTACTCCTGTATGCAACTTTCAAGAAAGTGATGTACGAAATGAAGTAAAGCTAAAAGACGTAGAGGTTTCTTTGGAACGTTTAACAGTTGTTCCAActgtacatataaaagaaaaaacaccGGATGTCGAGAAACAcaacaacaattattttttgtgtaaaGTTTGTAAGGAGagtttttcttcaaaattggCTAAACGTATACATATTAAGTCGTCTCATATAGCATATATGTCAAGCATATGTGGTGCACGTTATAAGTTAAAGCATAAATTACTTCAGCATTATCTACGCGAACATGTTTCTAAACAAAATCAATGTTGTATTTGTTATATGCTATTATCTGATTATGAAGCGCTGAAGCAACACTTAAATGTTCATTGTCTGAAGTATATTCAACGACAAGACGACCAATATTTAATAGATACTGAATTAGAATGCAACTTGACCAAAAAATCTAAGTATCTTCATGACGAGACATTCTTGTCGACAACATCTTTGAAGGAACATCAAAGTGGTTGTACAGCACAAAAAGAAATGGATGATCAGAAAGATTCCATGGAAGAAGCAAATTTATACCCGAAGGATATTCCTGAAGTACAGCACGAGAAGACCGATGATATTGACATAACATGTcacgaaaaaattaatgatttatgtaatccATTAAATAGcgattgtgtaaaaaaatcgaaTGAACATCAAATATcgtttcataataaaaaagaacaagaaattaATGAAGCTAATCAAAACATTCTtgttaataataacttaattgaGGAGGAAATAGGAACTATTAATGAATCGCAACACCCTAAAAAGCTTTTGGAAAATAACTCCACAATTAGTAATCAAGATGTCGCTAATACGCAATTGAATAACATTGCAACAAAGAATGGAACTTATCCCTGCGATATATGTGGAAAGCAATTTCAAACTTCCAAGAATTTGGAGACACATGTACGCAATTTTAACTTTACCTCCGATGTTTGTCCATTGTGTGGCACTGGATTTAGTTCTAAACGTTTTTTACAGTCACATATCACTGCAGCGCATGTACCACATATATCGCAAACTTACCATTTTCATTGCGTATTCTGTAACCAaggttttttcaaaaaatacgaTCTTCGGTCTCATATATTACACTTACATGGTCAACAAGTACTCAATACGCTCACACGCAATCCTAATATAAATCAAGAGAAATCCAACGAAACAATTATCCATAGCACAGTATGTAACGTTTGTAATTTGGTATTTGAAACTCATGATCGCTATGTTGAACATCGAATGtactattataaaaatcatacaTTTAGATGCTCACTCTGTGAACAAAACTTTCAAGGAATGTACATGTTTCATCATCATAACAAACTTACACATTGTCCAGAAGATAAACGCAAGTCATACAATCACATCTGCGAGGTATGCCATGAGGGATTCAATCATGAGTCACATTTTTATTCGCATAATATGCATGTGCATTCGAATGAAGTGAATTTAGATGAGACTGCAAAAGAATTTGAAGATATCAAGAATAGAAGCCGAGATTCATCCAACATCCAGAAACAGATTAGAAATTGTTCTATAGATCAAGAAAAACAAAATGAACAATCCAATAAGTATACTTGCCAAATTTGtcaaatgaaatgtaaaaatatggaTCATATAGTAATGCACAAAGAATTTTATTCCAATGATGGCGATTTTAAATGTGACAAGTGTAATAGACGATGCAAAACATTTGATTTTCTTAATCAACATAAGAAATTAACTCATTTCTGTCGGGATGTTTATAATGGACATATGTGTCACATTTGTGGCGAAATCCTGGAAACAGATATTTCATTGAACTGTCACGAAAAGCACTTCCATTCAAATATTATCAGCAATAATACGGATAATTGGAAGAATTGTAATCAGCTATCatcttcaaatataatatatccaaGTAAATCTAAGAACAATACATGTAATGTAACTGAATACAAATGCTTATTTTGTGATATGAAGTTCTCTACTCCTAACACTGTCCAAACacatattgtttatgttcaTATGGATGATATGATAGCTGAACGAGCTACTTTAAAACTTGCTCTTCCCATTACTAATAGCAATAGCATTCATAAACAATTTGAAATTGGTCAAATACCATCAACATCGTCACtgtcatcgtcatcatcatcatcatcgtcatcatcatcaacTGAAAGTAAATTAGTTAAATTTCTTCAAAGATCGACGATTCAACAATCTAATAACATCGGAAGTACTATAGCTAAAAATGGAATGAACAATAAAACtgttgaattatttaagaaCTTTAGAATTATGTATCCAAAAGATACAATTACAGAGAAGAATTCAAATCCATGTATTAACAAATCTAAAGACAGTATCTCGACGTGTAGTATTATTGCATTAAATACGGAATCAAAAACAGATATTCCAGTTTCTTCATCCGTTGCAACAACTTCTAGGGTTGGTGCATCAAATACTGAAGTTGGAAACAACGCTCCAGTTTTTCTACCTACTGGATCGATATTTAAAACTATATCCAATACTGAATCCAAAGATAACATGTCAATTTCTCTACTTGGATCAACCAACAATCTCCAAAAAGGTGATGAAATTCCTTTAAAATCTGGTTCGACCAATGAGTTTAAAACTAACTCATTAACTAAGGgatctataataattaataaatccaaAACTGCATATCTTTTACCAACTAGATCCCTATCAACATTCAAACGTGTTATGCCAAAACCTTGGAAAAGCAATGAAATTACAAATCAGAAATCTGAATCAGCGAACAGATACGCCACTGGTCATGGTTATTCATGCCCATTATGTCCGCTAGAATACCCATCTTTGCTGTTCTTCCATGCACATCTCAAATATGCTCATGCAGATTCCATCGTTTCCATTCGAACTGATGAATTGACTGTTCCACAGGTGAATAAATCTCAGAAAGCCTCTATGATAGAATGTTTATTGTGTCCATGTACCTTCCCTGATGAGACCAAGTATAAGAAGCATTTGAGAAACTCTCATACATATTATGTGTATATCCCAAACTCTCAAGAGATGACGAAAATTAATAACGTGCATAATCCTCCAATACAGACAAACGTTAACAGAAAAAGCACAGTTCCTGAAACAATTACTATAGATGATGATGATAACGTCAAGAATACATCAGATCAAGAAGCAGCCGAAGTTACAGCGCTCAATTACAAAGAACAGAATGAGAAAATTGGTAAATTAAGAGTGAAGCCTCTTGCAAAGatcattgaaaatttatctATGGATTCTGCATCGAAACTCCTATAG
Protein Sequence: MARVQPYERVVNAVIIRTNPTLGIEIQNGTKIKEEPIDTTSNTDTTEDDTPIVRNYYSLIDHDHHYYDKSLSNTSCKSINNTENRHSSNGHNAHSNDVTNTVNTDRKNAKTKKEIDDTLPRFKKRKYSNEVFSNKNTSALCSVTKSVKRKRKQKSITLDYKKKIQCKNKLVKNGFTCDICFRKFNCLSHWKLHKQYYELDKSNKCRVCNKYFVGNDKLQSDTCHCTHNVRIFLSSYNCNFCGRIFTKKFLLQSHLFHVHNELICFNDTVKRESKIFEINTSPKDDILRTSANKNSLCSNNLVQSEKINTTLINVNKSHNDDVINTEKSRTEKLFNNEVSPTKRLRQPTLTEYLELYKKKHNIKFSPSKLNVTKDDFPTCALHRDDQIEKLPEEQNGPSDPLSTQSDNLLKRTVSSIQKQSTKHEVHKKPFVKLHADVEMMKSFLEKLSDTVVEDKITEDGTSNIISYDRGIPYSLRSLNGVSSVEASSNLGKRENKSISKKSRFGTQFDIKNKGNEIDLEKITSKVDWKIIMAHFKCRECSIFLTRCDEQPRNSYQISALKSMKNTCLTPVCNFQESDVRNEVKLKDVEVSLERLTVVPTVHIKEKTPDVEKHNNNYFLCKVCKESFSSKLAKRIHIKSSHIAYMSSICGARYKLKHKLLQHYLREHVSKQNQCCICYMLLSDYEALKQHLNVHCLKYIQRQDDQYLIDTELECNLTKKSKYLHDETFLSTTSLKEHQSGCTAQKEMDDQKDSMEEANLYPKDIPEVQHEKTDDIDITCHEKINDLCNPLNSDCVKKSNEHQISFHNKKEQEINEANQNILVNNNLIEEEIGTINESQHPKKLLENNSTISNQDVANTQLNNIATKNGTYPCDICGKQFQTSKNLETHVRNFNFTSDVCPLCGTGFSSKRFLQSHITAAHVPHISQTYHFHCVFCNQGFFKKYDLRSHILHLHGQQVLNTLTRNPNINQEKSNETIIHSTVCNVCNLVFETHDRYVEHRMYYYKNHTFRCSLCEQNFQGMYMFHHHNKLTHCPEDKRKSYNHICEVCHEGFNHESHFYSHNMHVHSNEVNLDETAKEFEDIKNRSRDSSNIQKQIRNCSIDQEKQNEQSNKYTCQICQMKCKNMDHIVMHKEFYSNDGDFKCDKCNRRCKTFDFLNQHKKLTHFCRDVYNGHMCHICGEILETDISLNCHEKHFHSNIISNNTDNWKNCNQLSSSNIIYPSKSKNNTCNVTEYKCLFCDMKFSTPNTVQTHIVYVHMDDMIAERATLKLALPITNSNSIHKQFEIGQIPSTSSLSSSSSSSSSSSSTESKLVKFLQRSTIQQSNNIGSTIAKNGMNNKTVELFKNFRIMYPKDTITEKNSNPCINKSKDSISTCSIIALNTESKTDIPVSSSVATTSRVGASNTEVGNNAPVFLPTGSIFKTISNTESKDNMSISLLGSTNNLQKGDEIPLKSGSTNEFKTNSLTKGSIIINKSKTAYLLPTRSLSTFKRVMPKPWKSNEITNQKSESANRYATGHGYSCPLCPLEYPSLLFFHAHLKYAHADSIVSIRTDELTVPQVNKSQKASMIECLLCPCTFPDETKYKKHLRNSHTYYVYIPNSQEMTKINNVHNPPIQTNVNRKSTVPETITIDDDDNVKNTSDQEAAEVTALNYKEQNEKIGKLRVKPLAKIIENLSMDSASKLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01477929;
90% Identity: -
80% Identity: -