Tcor005631.1
Basic Information
- Insect
- Trachymyrmex cornetzi
- Gene Symbol
- prdm10
- Assembly
- GCA_001594075.1
- Location
- NW:34386-40360[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00036 0.025 14.5 0.6 2 23 522 543 521 543 0.97 2 11 0.00022 0.015 15.1 0.3 2 23 556 577 555 577 0.95 3 11 0.012 0.84 9.7 3.3 1 19 594 612 594 616 0.93 4 11 0.00026 0.018 14.9 0.3 2 23 625 646 624 646 0.97 5 11 0.0031 0.22 11.5 0.3 1 23 653 675 653 675 0.98 6 11 0.00061 0.042 13.8 4.2 1 23 682 704 682 705 0.95 7 11 0.0017 0.12 12.4 4.6 1 23 710 732 710 732 0.98 8 11 2.4e-05 0.0016 18.2 5.9 1 23 738 761 738 762 0.95 9 11 0.0012 0.084 12.8 1.7 1 23 794 817 794 817 0.97 10 11 2.7e-05 0.0019 18.0 2.4 1 23 839 862 839 862 0.97 11 11 0.0011 0.076 13.0 3.4 2 23 899 921 898 921 0.96
Sequence Information
- Coding Sequence
- ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTGCCGAGTCCTTCGAGATATCTAGCATCGACAGGGGGGCTGACATCTCAGTGAATTGGCCTACAGATCATCCTTTTGCCTCGTCGCTGTGCGAACAGCCGAAGAAGCTGAACAACAGGCTCCTATTCCTGACTGTGGAATATGTGGAAGATCAATCCCGACTGTTTCCTACGTACGAGCAGATCTCCTTTTCTCCGAGGGCGGCTTCTCCCCTATCAGAGTTTGAGCATCGAGTCAGCCCGCTGGATCCAAATATGAGCTCTACTGCTAGATATTCTCCCACACCGGTCCAACTACCTTCCTCTCCCTTTCATAACTCTGTTGTTGTGCTGCAAGGTCCAACATCACCCTTAATGTCCCAGCCTGAACCAAATATACGAACCAGCATCAATTATGTGACTCAGCTGGCTCATCCGATTGACACTCAGACTGTACCTCAAACGGATGGTACCACAGACTTTGTTGGCAATGGGAATGAAGACGGACTCGTGTCCAGCGTCAGcagtgaattaattttaatgcaggAAACTGCACCCGAGTTGGAATCTTCGACGACTCCCTTGATGCTAACAGGAATACCAGGCACAGACTTTGCTCTAACTAGAGACTTCCTGGTGATGCAGGATGATCAAATAAATGTTATCAACACGTTTAAAAATCAGAACATGGAGATAGAGGACAACCCTATCGCTTTACCTATTACTGAAGAtgcaaataaagaaaacaaCAATCTTGCTTTGTCAGAGTGTGATAAAGAAATTGAACAAATTACCGAAGACCCATTGTCCattgagaagaaaaaaatagttgAGAAGAAAGATGTAAGGAGATCTAAACGACATATAACagataagaaaaatttctGGGGAGATGACGAATATGACAGTAATTGTGCCAAAGACGATAGCTCTAATTTAACTGATGTATGCGCTATCGCAGATCAACCTGTACCATCGCGTGCTGTAGCAACACTGCCAGGATCATATCTTTTGTTAAACAAACTGTCTACATCGCATGGTTCAGCAAATAACGTAACCTACGGAGTTTTTGCGAAACGTAATATTCGAAGACGCACACAATTTGGGCCCATAGAAGGTGTATTGTGCACTTATGATGGCTCGTCCTTCGAGAATGTTTTGCCACTGCTCTATGAGACTCAGGATGGAGAATTTTTGAAAGTAGATGTTTCCAACGAAAATACTTCAAATTGGATGCGTTTTGTGCGACCTGCACTGACATATAAAGAACAAAATCTAATAATTTGTCAACAGAAAGATGGAATAGTGTTTTTGACTAATAGAAACATCTCGCCAAAAGAAGAACTGAAAGCAGGTCCTAGTCCAGACTATGCAAGTCGTAGAAATTTACCAATACTCAAACCAgatataaaagatgaaaaagAAGTGGTAAATCAAACATCCACATGGCCACGTTTGGATAATAATTCTTACAATCGACGTATAAAGATGTTTCGCGACAGAAACATGAAAGAAAAGGAGAACTCGCGGCAGAACAAGTGTGACAAGGAGTGGAAATGTTCCGTGTGTAAATTGATTTTCAGGACTGCATGCCTGCTTAACTTGCACATGGCCATTCATTCTTCTAACAATATCAAAATTGAGAATCAAATGTCCACATGCCCACAGTGTGGACAAGAATTCCAGAAACAAAGCGAATTGGTGAATCACGTGTCTCAGCACGGACGAACGGCGTTACCTAAGGCAAAGCGATTAACTCCTCTAGGTTCATACAAGTGTTCAATGTGTTACAAACGTTTTGCTACAAAGATACGATTACAACAGCACTGTTTGGCGCATGGTGCTGAGGACCAAAAACCACTGCCATGCAGTATTTGCTTGAAACGATTTATGAACAACTCCGCGTTGTCCGGTCATCTGAAAACGCATAAAGAAAACAAACAGGTCTTTGAGTGCCCAATGTGCAGGCAGCTATTTCGCCAAGGTACGATGCTAAAGGATCACGTTGAGACACATAGAAATCAAGATGGTATATTCAGTTGCCCTCACTGCCAGCGAACGTTCATCAAGTATTCTGTCATTCGCAAACACATTCGGGCACATCATTGCGAAAGGAAGCACAAGTGCCAGCATTGTGCGAAACGTTTTCCGACGGTCGACAAATTGCGAATGCATCTGTTAAAGCACTCCGATCACAGAGAATTTCATTGCGCGAACTGCGGTAAACGATTCAAAAGGAAAGATAAATTGAAGGAGCACATGACTAAAATACATCATTCTCAAACGGTTAATGGAGAACAATTGACACAGAACAACCAGGCGAAGAAATTTGTGCCAAAGataaatcCGAGCGATTACAATcgctttatttacaaatgtcaTCAATGCCTGGTGGGTTTCAAACGAAGAGGAATGCTGGTAAATCACTTAGCGAAGCGGCATCCCGATGTCGCTCCCGAATCTGTGCCAGAATTGAACTTGCCTATCTTGCGACAAACCAGAGATTACTATTGCCAGTATTGCGATAAGgttTATAAAAGTAGCAGCAAGCGTAAAGCACATATCATGAAGAACCATCCTGGCGCGGCCTTGCCGCCTAGTAACCGACAAGAGGAATCCGAATTTTCAGGACTGCCGAATCCAAGCTTCAGCCAGACAGTAGGCAGCATTACGACTAGTCCTCAAAGTTGCCAATGGTGTCATAAACAATACGCCAGCAAGgCAAAGCTGTTGCAACATCAACGAAAGAAACACGCGCATCTGATGGAGCCGGCGGATCAAGTACCGCGATCGCGAAACCGGCCGCCACAAAATCAAAATCAACCACCCACGCTGAACGATAACAACTTTATGATATCTGATTATATACAAGGATGCGATGGAGATTTCCTGAAACAGAAAATAATCAAACTAACGAACGACGTTGATCTAATAGGCAATGGTGGTCTGGAGATGATTGGTCAACAGTTTGTACGTATGCGCGACATACGTTGA
- Protein Sequence
- MDPRGPPEGAPAESFEISSIDRGADISVNWPTDHPFASSLCEQPKKLNNRLLFLTVEYVEDQSRLFPTYEQISFSPRAASPLSEFEHRVSPLDPNMSSTARYSPTPVQLPSSPFHNSVVVLQGPTSPLMSQPEPNIRTSINYVTQLAHPIDTQTVPQTDGTTDFVGNGNEDGLVSSVSSELILMQETAPELESSTTPLMLTGIPGTDFALTRDFLVMQDDQINVINTFKNQNMEIEDNPIALPITEDANKENNNLALSECDKEIEQITEDPLSIEKKKIVEKKDVRRSKRHITDKKNFWGDDEYDSNCAKDDSSNLTDVCAIADQPVPSRAVATLPGSYLLLNKLSTSHGSANNVTYGVFAKRNIRRRTQFGPIEGVLCTYDGSSFENVLPLLYETQDGEFLKVDVSNENTSNWMRFVRPALTYKEQNLIICQQKDGIVFLTNRNISPKEELKAGPSPDYASRRNLPILKPDIKDEKEVVNQTSTWPRLDNNSYNRRIKMFRDRNMKEKENSRQNKCDKEWKCSVCKLIFRTACLLNLHMAIHSSNNIKIENQMSTCPQCGQEFQKQSELVNHVSQHGRTALPKAKRLTPLGSYKCSMCYKRFATKIRLQQHCLAHGAEDQKPLPCSICLKRFMNNSALSGHLKTHKENKQVFECPMCRQLFRQGTMLKDHVETHRNQDGIFSCPHCQRTFIKYSVIRKHIRAHHCERKHKCQHCAKRFPTVDKLRMHLLKHSDHREFHCANCGKRFKRKDKLKEHMTKIHHSQTVNGEQLTQNNQAKKFVPKINPSDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQEESEFSGLPNPSFSQTVGSITTSPQSCQWCHKQYASKAKLLQHQRKKHAHLMEPADQVPRSRNRPPQNQNQPPTLNDNNFMISDYIQGCDGDFLKQKIIKLTNDVDLIGNGGLEMIGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00885376;
- 90% Identity
- iTF_01523591;
- 80% Identity
- -