Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: -
Assembly: GCA_001594075.1
Location: NW:1866018-1874733[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 4.6 3.2e+02 1.6 0.1 2 17 71 86 70 87 0.88

2 19 0.24 17 5.6 7.5 2 23 317 339 316 339 0.97

3 19 0.029 2 8.5 2.2 1 23 388 410 388 410 0.97

4 19 0.88 61 3.8 1.1 1 23 459 481 459 481 0.97

5 19 0.04 2.8 8.0 0.1 1 20 529 548 529 550 0.92

6 19 0.00088 0.061 13.3 1.8 1 23 590 612 590 612 0.98

7 19 2.8e-05 0.002 17.9 0.1 1 23 659 681 659 681 0.96

8 19 0.0028 0.19 11.7 0.1 1 23 687 709 687 709 0.97

9 19 1.5e-05 0.0011 18.8 0.2 1 23 752 775 752 775 0.96

10 19 0.0022 0.15 12.0 0.6 1 23 781 804 781 804 0.96

11 19 3.2e-05 0.0022 17.8 2.5 2 23 812 834 811 834 0.97

12 19 0.00012 0.008 16.0 0.0 1 23 842 864 842 864 0.93

13 19 0.11 7.8 6.6 0.1 1 20 924 943 924 943 0.96

14 19 0.12 8 6.6 0.4 2 23 963 984 962 984 0.96

15 19 2.1e-06 0.00015 21.5 0.6 1 23 997 1019 997 1019 0.97

16 19 9.2e-05 0.0064 16.3 3.1 1 23 1041 1064 1041 1064 0.94

17 19 0.0016 0.11 12.4 1.3 2 23 1123 1145 1122 1145 0.95

18 19 0.00038 0.026 14.4 1.6 1 23 1163 1186 1163 1186 0.93

19 19 0.0017 0.12 12.3 0.3 2 23 1279 1301 1279 1301 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	4.6	3.2e+02	1.6	0.1	2	17	71	86	70	87	0.88
2	19	0.24	17	5.6	7.5	2	23	317	339	316	339	0.97
3	19	0.029	2	8.5	2.2	1	23	388	410	388	410	0.97
4	19	0.88	61	3.8	1.1	1	23	459	481	459	481	0.97
5	19	0.04	2.8	8.0	0.1	1	20	529	548	529	550	0.92
6	19	0.00088	0.061	13.3	1.8	1	23	590	612	590	612	0.98
7	19	2.8e-05	0.002	17.9	0.1	1	23	659	681	659	681	0.96
8	19	0.0028	0.19	11.7	0.1	1	23	687	709	687	709	0.97
9	19	1.5e-05	0.0011	18.8	0.2	1	23	752	775	752	775	0.96
10	19	0.0022	0.15	12.0	0.6	1	23	781	804	781	804	0.96
11	19	3.2e-05	0.0022	17.8	2.5	2	23	812	834	811	834	0.97
12	19	0.00012	0.008	16.0	0.0	1	23	842	864	842	864	0.93
13	19	0.11	7.8	6.6	0.1	1	20	924	943	924	943	0.96
14	19	0.12	8	6.6	0.4	2	23	963	984	962	984	0.96
15	19	2.1e-06	0.00015	21.5	0.6	1	23	997	1019	997	1019	0.97
16	19	9.2e-05	0.0064	16.3	3.1	1	23	1041	1064	1041	1064	0.94
17	19	0.0016	0.11	12.4	1.3	2	23	1123	1145	1122	1145	0.95
18	19	0.00038	0.026	14.4	1.6	1	23	1163	1186	1163	1186	0.93
19	19	0.0017	0.12	12.3	0.3	2	23	1279	1301	1279	1301	0.96

Sequence Information

Coding Sequence: ATGATGGACGAGAACGTGGTGGAGAGCGAAAACGAGGAGGCGATCGAGAACGTGGAGAATGTCTGCAGACTGTGCCTTTCCAAGGATGGACCTAGAGCTTCGGTGTTTGCAACGCAGGAGGAAGAGGAGTCGTCCAGGGAGCTGTTAGTCGCTAAGATTCAGGCCTGCCTGTCGATCCAGatttcgACAACCGATAAGCTGTCCACATGGATATGCACAAATTGTGTGAAAAGCGTTAATCAATGGTATACCTACAAGGAATCGTGTTTGCGTTCTCAGGACAAACTACAAGAATGGCTGGCAAATCAATTGCAATCGAATTCTACGGTTATTAGGATCAAAGATGAACCAATGGACATAGATTACGAAAATAGTGTAGAAATTATCGAGGAGATCGTCAATAATGTAGAAGCTATCGAGAAGACCACTAATAATGTAGAAGTTGTCGAGAAGATCATTAATGATGTAGAAATTGTAGAGAATACCACCAATAATGTAGAAATTATTGAGGAGACATCCACTAACTTGGAACAACCACATCCACCAGTTCAAAAAGTGGAAAACAATGAATCTAGTAATGAAAAAGTGCAAGATGTAGTAGATAACAGCGATGTTAATGATGCTGCGAATGATACTGACAAAGACCCCGAACCAATCTCATCCGCAATGGAAAAGGAAACTGATAAGGAAAAGAATCAAGAGGATCAGCAGAATTCTATAGTTCTGTGTTCCATTAAAAACGAACCGCAAGATGAAGACGATACCGATGGTACCATAGAAGTAGAATCGAATAGCAGTGAATTGAATGCCATGGCAGTCGATGAGGCAGAGGACACTGTCATGGAGGCTGATTCCACGCAAAAGTCTAATGCGGCTGGCGCATCGCCTAAGAAGAAATTCAGACGCGGTCCTCATACTCACTTCAGAGGAACGCGTGTTTTTAAACAGAAGTGCACGCACTGCCAGATATTTTTGCATTCTAAATACTCGTACATGAAACACATGAAGAGGTTCCACAGTAAAGAAAATGGCATTGGAAATTCAGAGATGCGAAACGACGACGAGGAGATGATAGAGGATCTAGAAGATGAATTGATCAGTATGGAGAAGGACTCACCGCTGACGCAAGTTCAACAGGACATTATTAGTCAACTGAAAACTTTTTCTTGCTACTCTTGCGAACAGACGTTTAACGATCGACGTAGCACTCTTTCTCATATACGTCAACATATGCCGGATCTACGACCATACACATGTATTGCTTGTTTGACAGAATTTCCAGATCGATCAATGTATCAGTTACATTGCGGAGCTTCCTTCGAATGCGCCATGAAGATTGCTCTAGTTGTACCGAAACACGGTAGCGAGCGATATTTTACATGTAACATGTGTTTGCGTTCAATGCAAGGTAGAAAGGAGTTACTCAGCCACTTGTCGAAGCATTCTGATAAGCAGTACGAGGAGATGATGTCGTCGTCGACGCGAGCTCCGCCTAAACTGAAGCCGATGGCACCGTTGCCATCCTCGAAAAACAGCACTCTCCATAAGAGCGGACCTTATAAGAATGGCGATCCAAAGCATAATCATGCCTGCGATTTATGCGGCATGATCTACCGATATCGGCCCAATATGCTCAAGCACAGAGAGATATGTGCGCGATTGGACCCAGACAACAGAATATTGTACAAATGCGTGCATTGTTACATGACGTTCCTTGTGTTTAAGAAGTTCCATTATCACATTACAGCCGATcataagaaaaaagattttacttGTTCTGAGTGCTTTTCCAAATTCCGATCACCCAGCGATTTTGTAACTCATTACGAAACCCATCGCACGACAATGCAAGACAACCTACAAGAGCAGTATGACAGTACCTCGCAGAATACAGTTCAAACGCCATTGAAGGAACGTAATGCTTACGAAACAAATGTCAAATCAAGAGTTAGTTCACGAATATCAAATCAGCAGTATCCTTGCCCTCTCTGTCCCGAGAAATTCTCCACGAAGGTTGAACTGAACGAGCATCGAACTCTTCATCTCAAAATGAAGATATATTCGTGCGCCATTTGCCGTAGCTTATTCAGCAGCGCCGGCTCTTTGGAAATCCATATGAAAGATCATGGTATCGAAGACGCGCACGAAAGGGACGCCAATGTCTCTTGCGTGGAATTTGGCAGCTTGGATGAAGATGTGAGGATTGAGAAAGATTTGGTGAATATCAGTAGCATCTCGGATCCTGGTCAAAATCATGAATGTGGCGAATGTGGTAAGGTACTATCCAGTTACGCTAATCTTCGACGACACGCTAAAATCGCTCACCGAAACACTAAGATCTATGATTGTGTCGATTGCTCGCGAATGTTTATGCGTAAAGATTTGTACGATACTCATATGGAGATCAAGCATAATTCTAAGAACACAATGCTGCAGTGTCCGCAATGCCCCAAGAGTTTTGTCTTCCATTCGAATTTCACTTATCACTTCCGTACTGCTCATCTCCAGAAATCACAAGCCGGTTATGCCTGCGATATCTGCGGCAAAGTCTTTGTTGAGGAAGCGTCTTTGAAAATACATAGGGGCTGGCACAATCGCGCCAATTCACGTTTGAGCACTCGATTTATAATAGGAGATCAGAATACATCCAATGACGCGCAAAAAGAATCAAGTAGCGTTGAATCTGTTGAGAATTCAGAACGGCCGGCGAGAGCACGAAAATCCTTCCCTAATCCACCACTTCAATCACTAACGAAGACATCAGGGAATTACCAATGTCAAGTATGCAATGACAAATTCAATGATGTCATAGAACTGAGGACCCATTTGTGGGACGTCCACTGCGCTCGCAACAAACCAGAGAAAAGTTTCTCTAATGATGAGCTTCAATGCGAACTCTGCACGAACATTTTCCCCGATAAGGGAACCTTAGCATGTCATATGCAATGGCACAAGGCTAATCCTATTCTCAGTGACATACAAAAAACGTTCGCCTGCGATATATGCGGTAGGTCTTACAGTTCGAAGAAGGCTCTATGGAAGCACAAGAGACTTCACAAAGCTACTGCTGTAGCATCAATTAAATTCCAATCTTTGGCTAGAAAACCGATGGCTACACAATTCCTATGCAACTTCTGTCGCAAAGTCTTTTCAAGCAATCAATCTTTGCAACGGCACAAACTCACTTTCCACAGTGATCCGCTGAATCAACAACGTGCGCAGCAACAGTTGTATAACAGCAGTCAATTATCGTCATTTGATGAACCAAGGACAAAGCGCGTGAAACCAGACATTGAAAATGATAATTCACAGACCAAATTGTCGCCTTTTGCCATGGACTTCGCTGGCGAAAAAAGGAAGCCGGTCATGTGCCATGTTTGCAAGAAAATGTTCCCTAACATGAGCGTGTTGTACAAGCATAAGCAAATGGTCCACAAACGATCAAGAATACCCGAGTGTATACCGATGTCGACTCAGGATGGCAAATTTTCATGCAACATCTGCTTCAAGAAATTCCCCGGTCTATCAAATCTGCGACAACATTTCACAATCAAACACAAGAAGACGTCCGAAGCCAGCAACGCATCAATGGCAGTGAGCAATGAGAGATTGTCGCTCCCGACACCCGAACGTCCAAAGGAAGCAACCTATGAAGTGGCCTACAATAACGTGATGTACAGCTGTAAATTGTGCAAGCAGTGTCACGTCTTCAATAAGAATTCTATCATAAGCCATATCACCAATGTGCACAACGCAGTGTATCAGGCCGATAGCAAGACGTTCCACAGGGAAATCACTCTGAGCACTTACGTAGTAAAGGACGCTATCGGAGCTACTTGTCCGCAATGCGATGTTAAATATCCTAATAACAGGGCTCTGAAGATACACTACATTAAGTTCCACGAAAATAacgattaa
Protein Sequence: MMDENVVESENEEAIENVENVCRLCLSKDGPRASVFATQEEEESSRELLVAKIQACLSIQISTTDKLSTWICTNCVKSVNQWYTYKESCLRSQDKLQEWLANQLQSNSTVIRIKDEPMDIDYENSVEIIEEIVNNVEAIEKTTNNVEVVEKIINDVEIVENTTNNVEIIEETSTNLEQPHPPVQKVENNESSNEKVQDVVDNSDVNDAANDTDKDPEPISSAMEKETDKEKNQEDQQNSIVLCSIKNEPQDEDDTDGTIEVESNSSELNAMAVDEAEDTVMEADSTQKSNAAGASPKKKFRRGPHTHFRGTRVFKQKCTHCQIFLHSKYSYMKHMKRFHSKENGIGNSEMRNDDEEMIEDLEDELISMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKHGSERYFTCNMCLRSMQGRKELLSHLSKHSDKQYEEMMSSSTRAPPKLKPMAPLPSSKNSTLHKSGPYKNGDPKHNHACDLCGMIYRYRPNMLKHREICARLDPDNRILYKCVHCYMTFLVFKKFHYHITADHKKKDFTCSECFSKFRSPSDFVTHYETHRTTMQDNLQEQYDSTSQNTVQTPLKERNAYETNVKSRVSSRISNQQYPCPLCPEKFSTKVELNEHRTLHLKMKIYSCAICRSLFSSAGSLEIHMKDHGIEDAHERDANVSCVEFGSLDEDVRIEKDLVNISSISDPGQNHECGECGKVLSSYANLRRHAKIAHRNTKIYDCVDCSRMFMRKDLYDTHMEIKHNSKNTMLQCPQCPKSFVFHSNFTYHFRTAHLQKSQAGYACDICGKVFVEEASLKIHRGWHNRANSRLSTRFIIGDQNTSNDAQKESSSVESVENSERPARARKSFPNPPLQSLTKTSGNYQCQVCNDKFNDVIELRTHLWDVHCARNKPEKSFSNDELQCELCTNIFPDKGTLACHMQWHKANPILSDIQKTFACDICGRSYSSKKALWKHKRLHKATAVASIKFQSLARKPMATQFLCNFCRKVFSSNQSLQRHKLTFHSDPLNQQRAQQQLYNSSQLSSFDEPRTKRVKPDIENDNSQTKLSPFAMDFAGEKRKPVMCHVCKKMFPNMSVLYKHKQMVHKRSRIPECIPMSTQDGKFSCNICFKKFPGLSNLRQHFTIKHKKTSEASNASMAVSNERLSLPTPERPKEATYEVAYNNVMYSCKLCKQCHVFNKNSIISHITNVHNAVYQADSKTFHREITLSTYVVKDAIGATCPQCDVKYPNNRALKIHYIKFHENND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00182140;
90% Identity: iTF_00016844;
80% Identity: -