Tcor004918.1
Basic Information
- Insect
- Trachymyrmex cornetzi
- Gene Symbol
- lov
- Assembly
- GCA_001594075.1
- Location
- NW:828488-832918[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7e-16 7e-13 47.5 0.0 1 44 542 585 542 586 0.95
Sequence Information
- Coding Sequence
- ATGTCGAGCGTCGGGGACAGTCCTGACAGAATGGCTCTGCAATCGCACTACTCCTTACGATGGCACAACCATCTCACCCACATACAACGGGCGTTCGAGGAGTTGTTGCAAGCGGAGATGCTCGTCGACGTGACCCTGATTTGCGCTGACAGCAGCGTCAAGGCACACAAAGTTGTCCTCAGCGCCTGCAGTCCTTTCTTCGAGAGGATATTCGCTGAAAATCCGTGCAAGCACCCCGTGATCGTGCTGAAGGACTTCTCGCATCATGAATTGTCCACTTTGGTGCACTTTATATATCGTGGCGAGGTGCAAATCGCCCAGGAGGAGTTACCGGGGCTGATGAAGGCCGCAGAGTGTCTGCAGGTGCGTGGGTTGTCGTCATCGGAGCCGAGGCCGGTGTCGACGGAACCCAGGCCGTTGTCGTTGGCGTCAACGCCGACGCGCGATCTTATTCTGGCTGGATCACCAACACCAGAAGTCGCGCGACACGGCACACCGGAAGATGATGAAAACGCGTTGGAGAGCACAACGGAGATGAAACCTATCCTGCTTCCACCAACGAGGGACCATCAGGCCAAGTCGCACATTGGCCACATGAACTTTGGCATCCGCGAGAGTTGCGGCTCGCCGTCAATGCCACGTCGGAAACAGGCGCGTCCGCGCCGACGATCCGGCGAATTGCTACCGCAAGATCTGAGCAGACGCTTGACCCCACCGGTCAGCTCGAGTCCATTGACGAGCGTTCTTAATCTCAGTGGTCAGCACCAGgcgcaacagcagcagcagcagcagcagcagcagctatTGCTGCAGCAATCTCAATATCATCAACAACAATCGATTAACAACGTACAGaaccagcagcagcagcagcagcagcagcaagaAGATATGGCGGAGAATCTCTCGATGAAGAAACCTATATCGCCGATCGGATTAGATCATCATCATGTGAAGACGGAGGGCAGTGAAGCGACGAGCAGTCCTCGCGGCTCGCCGCTCACAGGAACGAGTCTACTACATCATCCCGATCCTGTATCAGACATCCCGGCGGCCGTAGCAGCAGCTGTAGCGGCAACTGTAGCATTGTCGCTACCCACAATGCCGACGTTGTCGCTGTCGCAACCGCATCCTCCCGAGTACCTGACAAGCCTCAGCCAATGGCTGCCCGGGCCTCCTCAAAGTCaactgccgccgccgccgccgccggctCAAAGTCACCATCCACGCGAGGACAGTCCGCATGGTTCCAGCAGATCTCATCCGTatcaacaacagcagcaacaagAATCAGCTTTACCGCGACGTAGCGCTATGGCGATGTTCACACCGGCATTAGACGGCGTGACAGCTCTAGGCGGCGGACTTTTCTCGCACCATGCCACCACGTATGACCGGGGCATCCTCGCGGATTCGCTGCTTACGGATAATTTCAAGCCAGAAGCGCTGCAAAATCTCTTTGGTACTCCCAGTCTCGGCCCTCCGCCCGCTAAAAAGGCAAAAAAGCATCGTAATGATGGTGACGCGCCACGTAGATGGACCGATCACAACACTCGAGCTCTTGCAGTTAATAGGCCCAAAGGGCAACACAGCGCTCCGCGAGGAGGGCCACCACGGTCCTGGACGAATAACGAACTTACATTGGCTCTGCAACATGTTTGGGAAAAAAAGCTGACCACGTCGCAGGCTAGTCGTATGTTTGGTATTCCCTATAATAGCTTGCTGATGTACGTGCGTGGTAAATACGGGAAGAGTCTAAAGCTTGAGCAATTACGTAGGACTTGTACCGGCACCAATAACTCTGAAATCATGAATAACAATAACATCAAGCCCGTCCAGCAGTCCGCGCAGATGAGCCACGGGCTCACCGGTCTGCCGCTGCAGCATCCGGGGGACAACAGCGGCTATCCCCATCGCGGTCTACTCGGCGGCAACATGCCGCAGCCGCAGGACCATCATCATCAGGAGTCGTCGATGCAACCGCAACCAACGCAATCGACGCCCACGTTGCTACAGCAGAACGGTTCTGATTAG
- Protein Sequence
- MSSVGDSPDRMALQSHYSLRWHNHLTHIQRAFEELLQAEMLVDVTLICADSSVKAHKVVLSACSPFFERIFAENPCKHPVIVLKDFSHHELSTLVHFIYRGEVQIAQEELPGLMKAAECLQVRGLSSSEPRPVSTEPRPLSLASTPTRDLILAGSPTPEVARHGTPEDDENALESTTEMKPILLPPTRDHQAKSHIGHMNFGIRESCGSPSMPRRKQARPRRRSGELLPQDLSRRLTPPVSSSPLTSVLNLSGQHQAQQQQQQQQQQLLLQQSQYHQQQSINNVQNQQQQQQQQQEDMAENLSMKKPISPIGLDHHHVKTEGSEATSSPRGSPLTGTSLLHHPDPVSDIPAAVAAAVAATVALSLPTMPTLSLSQPHPPEYLTSLSQWLPGPPQSQLPPPPPPAQSHHPREDSPHGSSRSHPYQQQQQQESALPRRSAMAMFTPALDGVTALGGGLFSHHATTYDRGILADSLLTDNFKPEALQNLFGTPSLGPPPAKKAKKHRNDGDAPRRWTDHNTRALAVNRPKGQHSAPRGGPPRSWTNNELTLALQHVWEKKLTTSQASRMFGIPYNSLLMYVRGKYGKSLKLEQLRRTCTGTNNSEIMNNNNIKPVQQSAQMSHGLTGLPLQHPGDNSGYPHRGLLGGNMPQPQDHHHQESSMQPQPTQSTPTLLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01477024;
- 90% Identity
- iTF_01261767;
- 80% Identity
- iTF_01476363;